RNA id: XM_026921394.2


Basic Information

Item Value
RNA id XM_026921394.2
length 3850
RNA type mRNA
GC content 0.45
exon number 2
gene id wu:fa11c10
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11392434 ~ 11415449 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCAATTTTTTTCTACTCACTAATATATTGTAATGATTGATTTACAAATTTATGAATATAGTAGAAACTCATTTTGGTGTAGGCAGTAAAGATGCTTCACTATAACGGTCCACATTTCCACCTAAATAATGTTTCCCATGGTGGTACAATCCCTGCAGGAACTGAACCGAACTTTTCATAACCGGTGGATTTAAAGAAAACGTAATAACTGAAACTGTGCAGTGTTGTGTATGAGTTTATAatataagttaaattaaaaaaaaaaaaaaaaaaaaaaacccgctgttgattaatttaaaacctCTGCAGCGTCTGACAGgagGCCTCAGCCTGAAAGAGGGAACCTCAGGATTACAAGGGGATTGTATGGGACAGCGTGCATGTGTGCCTGTATGAGAAAGCAGATTGGGTCCCTGGTTTGCCGGCTTCAGCATTGACTTCACCAACTGCACTCACTCTGGTGGGTCAGTCTTCAGACTGATGTGGAATGCAACTTCTGGCGACCCCCTTCAACAAGTCTTCATTCAGTGAGCAGCACTGGGAAGAGCAAGGATAAAAGACAGGAGGTGACGCAAAAAGAGCGAGCAACAACAGCAGGAGCAGATCACTCGAGTCGGGGCCCTCGGGTGGGAAAGGAACTTAAAACCCAAGACAAAAGGAGCGTGCAAGAAAGGGATCAGTACAAAAGATTTTTCTGAGGAGCTGGACATTGGAAACACCAAGGGGTACGGACCATTAGCCTCTGTTTCACCCTTTTTTGAATTGCTCCCTCTGTCACGTTCACTGACCTAAACCCATCATGCCTGTGGAGACTCTTCGTCCCTCAGATGGCCGTCTGGCTGGAACACCTTTTACCTCAGCCATGCCTCTCCGAATCTTAAACAAGGGCCCAGACTATTTCCGCAGGGTTCCTGAGCCTGGTGTACGCAAGCTGAGTGCCGTTGAGCGTCTGGAGGCTGATAAGGCCAAGTATGTGAAGAGCCAGCAGGTGGCTCTCACCAGGCAGGAGCCCATCAAGCCCCCAGTCATTCGCAAGCCACTGATGTCTCCGGCCATGATGCTGCACACACCGCCGGCCAGGAAAGTCCCCCGCAGACCCTCAGACACCGAAAACGGGGGACAGGGGCCATGCAGGGCAACGCCACTCAACCTGGATGTCCTTAACAACCTTATCAACATCTCTGATGGGCCCCAACCCTTGTCCCCTGCTCCTAATTCTCCCTCTCCCTTAGCCATGTCTGGGCTGTCAGCAGACCCTCAGCAGAGTTGTGGCTTTAATGGGCATTTTCTGTTGAAGCCTGCTTCTTCCGGCACTTCCTCTTCTCTCAACAGCCCCATCCAGCCTTCATCTCTTGCTTCTCCTACTCCAGAGCCGAGCCACAGGCCTCCACCTGTGCCAGCCCGAGTTCCTAGACTCCCTGCACAGGGCAATTACAGCAGCCCAAACCCTGTGACAGTGCGGCGGGTTGATGTGCGGCCACAAGCGGAGATCAGGAAGCCCCAGAGGATGCCTCTACAGCCTCAGTCCAAACCTCCACAGCCCCAGCCTAAACCCAGACAGACACCACAGCCCCAGGccccacccccacccacacCATCCTTTAAATCCCCATCCCTCCCCTCACACTCTCCATCATCCCCCTGCCTACCCTCCAGCCCCCTGTTGCTACGAGCAGGCATGCTACCCCCAGCCTCACCAGCCTGTACCCGTTTATCCTCTGCAAGCTCACGGGGCTCAACACGTAGACGCCCCTCACTGCACCGCTCCAAATCAGACCTGAGCGACCGGTATGCACGTGCCAACGCTGACCTAGAGCGCTTCTTCAATTACTGTGGCTTAGAACCCAGCGAATTGGAGGGTATGGAGCATTTTGGACGTGCCAGTTCTGATATTGTCTCCATTTCAAAACTTCGAAGCGTCAGCACACCCAGCTCTGAGTGTGGAGATGAAGGCCATGCTTACagggaggaggaagatgatgatgactaTGATGGCCCTCCAAGGCCCAGCGAACGTGTTCCCTACGGCATCTCAGTCATCGAGAGGAATGCACGTGTCATCAAGTGGCTCTACGGGATCCGACAGGCTCGGGACTCTCAAAATGTTTCCAATGTATAGGTGCCTCACTGAAACACCAAAACACTGGTGAGAAGGAAAATAATGGGGACAGATCCAGATCAAACATGCCCCAGTTTTATGATGTCTTTTTACATgcaatatatttattatgttttttaagaCTCTTGAAGAAGATGAAAATTTTGTGTTGTATATTTGTGATCAGTATGGAGTATTCTTTATTTGCCTTACAGTAAGCTCAAGGATATTGGTTCTTATACATTTCATTTGTGTTACATTGTTATAGATATTTTGTCGTGGCAGCCCATTGTTGTTTCTTTTGGCTATGTAATTTGGGCTGTAATGATTTACCTCAAAGGGAGAGAAGACTGGAGCAAGCTTTAGATTCTCAGCACATTGACTTAGAAAGTGAAAGTCATTTAAAGCAATAATTAATGTACTAGATATTAAGAGCCATGAGAGTGTAACTGAATGGATGATGACGGTTGTGATGAACACAGCAATAGGCCAGCTGTATTTTTGATAATCAGGTACTTAGTCTTTATTATCAGACttagtcttcttttttttttttaaatcaaatatgcaTCGATATGGGAACTGTGGCTTCCAATATGTCAAGAGAACAATAGTAAGGGCTTAGTTATGATAAACCAGGTACTGTTTCAGGAAGTGAATGCAGCTTTCTGAGAGGCCGCAGTCCCCCAGTCATAGATAGAAAGGTTGCAGTAAGACACAGCTAGGACTAGGACTAAGAATAGGATTAGGACTAGGAAGCAAGGTTCTAGTCAGCATACATTACACTAAGACATGttcatacacagatacacatagGTGCATGCACTCAGAGGAACATTAACACATTGACTACTGGTCACTGTGCAAGAGTTGTTCTGTCAGCGTCAAGTGTGAATGTGTCGAAGAGACAAAACGGGTGTGTTGAGATATGGCACTAGTCAAGCGCAAGACTTGATGATACTGTGAAGGAACTCCGAGCAGctttaaacatctttttaaaCATGGCTGTGATTTTTGTCAGCATGTAAGAGCTTCCAATGCATGCTTTTATGTACAGGTGATATATGGAAAGCCATTTTAGCAAAGCACAGATGCAGCTGAAAAACATTCCAGCATTAATGttcaaaaacagttttgtggtttgattttattccGTTTCATTCTTTGTGTTCACGCAGCACTATTTCTCCCTGTGCAGGTTTATATAATTTGGGAAGTCATGTGTCCGATGGATGCAGGAGGTTGATGTGAAATAGCCTGAGACAGCAGGAATCAGTTTGTCAGAACTCTCAGATATAAGAACAGGCTTACATCTGTTTTCTGCAGAGATGAATGATTGAGGTGGTGAAACAGAAATGTTACTTTCAAGGAAGCTTGTAGTAATGTAAAATGTAGTAACATGACTTTATCTGTGGACATagctgtttttcactttttccctttgcagttttattttcaatttttcacCAACAGTCTGATGTTACAACACAGCAAGCATTCAGAGTTTGCTTGCTTTTTAGTGTGCAGTCAAATCTTTTTACATGCATATTGTTAAGGGTAAAACACTTACACATATGCTAATATTACCTGTGTAGAAATCACATAAAAATTATGCTTAGCCATGTTCTCTGGGCAATGAAGTATGACCAGGGTTGTGTGGTCAGCCTACTAGTGCTTTCAGCATTAAGTCATCAAAGACTGAATTTCTGATGTCCTCTAATGatattaataaacagaaaatgttttggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299755 lncRNA upstream 15990 11372995 ~ 11376620 (+) True G253212
TU299753 lncRNA upstream 20258 11370703 ~ 11372352 (+) True G253210
TU299681 lncRNA upstream 145748 11245898 ~ 11246862 (+) True G253151
TU299682 lncRNA upstream 147138 11244761 ~ 11245472 (+) True G253152
TU299500 lncRNA upstream 288083 11104139 ~ 11104527 (+) True G252996
TU299791 lncRNA downstream 52090 11461714 ~ 11462757 (+) True G253248
TU299793 lncRNA downstream 60427 11470051 ~ 11479369 (+) False zgc:103759
TU299787 lncRNA downstream 96834 11506458 ~ 11507627 (+) False arhgap4b
TU299813 lncRNA downstream 184880 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 319416 11729040 ~ 11729292 (+) True G253301
XM_026920982.2 mRNA upstream 22886 11344353 ~ 11369724 (+) True bcl2l1
XM_026920983.2 mRNA upstream 22886 11345536 ~ 11369724 (+) False bcl2l1
XM_034312153.1 mRNA upstream 22886 11345536 ~ 11369724 (+) False bcl2l1
XM_026920980.2 mRNA upstream 51084 11310969 ~ 11341526 (+) True arfgef2
XM_026920981.2 mRNA upstream 51084 11310969 ~ 11341526 (+) False arfgef2
XM_026920082.2 mRNA downstream 20214 11429838 ~ 11437645 (+) True nsfl1c
XM_026921241.2 mRNA downstream 34770 11444394 ~ 11453985 (+) True trpc4apb
XM_026921373.2 mRNA downstream 63671 11473295 ~ 11479376 (+) True zgc:103759
XM_026920331.2 mRNA downstream 73795 11483419 ~ 11507750 (+) False arhgap4b
XM_026920333.2 mRNA downstream 73795 11483419 ~ 11503952 (+) False arhgap4b
trnaf-gaa_28 other upstream 124927 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 132692 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 155248 11231429 ~ 11237362 (+) True oard1
XR_003403205.1 other upstream 395867 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 480077 10872029 ~ 10912533 (+) False atp2b3b
TU299947 other downstream 482526 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 703998 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 731863 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 957119 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1427427 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile