RNA id: XR_003403199.2


Basic Information

Item Value
RNA id XR_003403199.2
length 1680
RNA type misc_RNA
GC content 0.40
exon number 3
gene id wu:fa11c10
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11392434 ~ 11415449 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCGGGGCTCTTAAAGTTGAGCAATTTTTTTCTACTCACTAATATATTGTAATGATTGATTTACAAATTTATGAATATAGTAGAAACTCATTTTGGTGTAGGCAGTAAAGATGCTTCACTATAACGGTCCACATTTCCACCTAAATAATGTTTCCCATGGTGGTACAATCCCTGCAGGAACTGAACCGAACTTTTCATAACCGGTGGATTTAAAGAAAACGTAATAACTGAAACTGTGCAGTGTTGTGTATGAGTTTATAatataagttaaattaaaaaaaaaaaaaaaaaaaaaaacccgctgttgattaatttaaaacctCTGCAGCGTCTGACAGACTTCAAGGCTGTGTGGACTTTCGCAAGCCTGTTCAGTTCACTGACACACATCCTCTTTGAGTGGTTATCATAACAGTCCTTACTCTCCACCATCGATCAAGAACCGTGTAATAACTCTACATTGCACCTTTTGTAAGGTGACACTTATACTCGGCTACCTCTGGAataacttcacaacatttatggCTTCACTGTTCGTTCCAGCAGCATGACCAACCTCTGCTGGACTTGGCTTGAACATCAGGCAGCTGTCCTCTGTGTCCTTTCAGTTTATGACCTGTGTGTCTGCACATTGTGGGAACAGGCAGGCAAAGccaaacacacgcacacgaTGAAACATGTACAATCTGTGGGATAGAGACAGAAACATTCAAAAGGGAACATCGAGAAGCAATCGagacagagaaaatgagagacagagacactaAAACACCTCCTTGTCTTTCTTTGCTCCTCTTCCTTCCACTTCTATTCATGTCGCCAAGGGACCTTTCACAGAGTAAATCCCTTCTCTAATTAAACATGCAAAATCTAGCACACTGTGTGCTCCCTCTAATGCGTGGAAAAAGAGTAAGGAATTTTCTTGCCACTTTAGCAGCCACATCCTGCTTCCCTCTGTCCCTGCTTTATGAAGACATGCACAGAGATATGCAGGTGAACgtacagtgtgtacagaactTACTTTGTAaagcattaacatttattaaatgcaATACAGTGTGATTGTGTAAGTTTTCTCTACACTTCTCCCAGGATTCTGGTaaaatttttatccatttctttcTAGCATCTAATGCCAATTCTGCTCATCATTATTGTGGCAGGATAATAATACATCATGTGACTGCTTTTTCATGCTGTTTTGTCAGACCCCCATCAATCTATTTTAAACTTCAGAGCTACATTTGTGTTCTTCTGACTGACATCTGACATAAATCTGCACatgatttattaaaagattaaacaaGGCAAAAGTGGCAACACTCATTGTATCCttacaccataaacacacacatatgtatattcCTGCACATTTGTTGTTCCTCTCCAGCCTTCACCAAACATTACTCCtgctctcttcctgtctcattCATGTTGTAAAGGGGATGTCATGCTGTGAGCATCTTCAAAAGGAAACATTAATGTCTCAGAGGCAATGCTTCCAAACTGGGTCGCTCCACCATGCAGGAGATTTAACATGAAGAAGAGACtggtcaggaaaaaaaaaaacagcacagtgaGTCAGACTGGTGCATGCTGTTTGAGTGTTTAATTCTGCAATTGGTCTGGCAGGTGGAGTTTCCCTCAAGGGAAACTGAGCCATAAAGTAACTGCAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299755 lncRNA upstream 15972 11372995 ~ 11376620 (+) True G253212
TU299753 lncRNA upstream 20240 11370703 ~ 11372352 (+) True G253210
TU299681 lncRNA upstream 145730 11245898 ~ 11246862 (+) True G253151
TU299682 lncRNA upstream 147120 11244761 ~ 11245472 (+) True G253152
TU299500 lncRNA upstream 288065 11104139 ~ 11104527 (+) True G252996
TU299791 lncRNA downstream 46265 11461714 ~ 11462757 (+) True G253248
TU299793 lncRNA downstream 54602 11470051 ~ 11479369 (+) False zgc:103759
TU299787 lncRNA downstream 91009 11506458 ~ 11507627 (+) False arhgap4b
TU299813 lncRNA downstream 179055 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 313591 11729040 ~ 11729292 (+) True G253301
XM_026920982.2 mRNA upstream 22868 11344353 ~ 11369724 (+) True bcl2l1
XM_026920983.2 mRNA upstream 22868 11345536 ~ 11369724 (+) False bcl2l1
XM_034312153.1 mRNA upstream 22868 11345536 ~ 11369724 (+) False bcl2l1
XM_026920980.2 mRNA upstream 51066 11310969 ~ 11341526 (+) True arfgef2
XM_026920981.2 mRNA upstream 51066 11310969 ~ 11341526 (+) False arfgef2
XM_026920082.2 mRNA downstream 14389 11429838 ~ 11437645 (+) True nsfl1c
XM_026921241.2 mRNA downstream 28945 11444394 ~ 11453985 (+) True trpc4apb
XM_026921373.2 mRNA downstream 57846 11473295 ~ 11479376 (+) True zgc:103759
XM_026920331.2 mRNA downstream 67970 11483419 ~ 11507750 (+) False arhgap4b
XM_026920333.2 mRNA downstream 67970 11483419 ~ 11503952 (+) False arhgap4b
trnaf-gaa_28 other upstream 124909 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 132674 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 155230 11231429 ~ 11237362 (+) True oard1
XR_003403205.1 other upstream 395849 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 480059 10872029 ~ 10912533 (+) False atp2b3b
TU299947 other downstream 476701 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 698173 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 726038 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 951294 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1421602 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile