RNA id: XM_026920331.2


Basic Information

Item Value
RNA id XM_026920331.2
length 5900
RNA type mRNA
GC content 0.45
exon number 24
gene id arhgap4b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11483419 ~ 11507750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttgtgtgagtgtgtgtcagagtgtggtgtgtgtatgagagggGGGGAGCAGAACAAGCAGGAGGGGAGCTGTTttcttgtgtgtatttatgtgtgtgagtataCGGAAGAGAGAGGAGGGCTATTTTGAATGCGCACCTCAgtgagaaagagcgagagagggagggaggaaaggaggagagagagagacgactGTGTTGAATGTGTCACAAGGAGAGAAATCAAATTGGTCCGTGAAATCTGTGTGACTCAAACACAGTGTTCTCTGTGTCCAAGggtgagggagggaggaggaaaggaagaaagcaagggagagtgacagacagaagGCTACAGAGAATGAGGCGAGGACAATCACATTTATCCACTCGCTCAGGAAGCAGATAAAGAAAACTACTGAGCCTCTTGCCTGCTTAGTTCTACAGCTGAATCCATAAAAGCACACAAAAGGGAGATCAACTGCAGTGCTGAGGAAACTGATAACTGTCTCTAAGCTGACtgaaacagagacacacacaccatcatttcTCTTTTCCGTTTTTTGTAGTAGCACAGAAGATTTTTAGTGTGCGCCAGTGTTTGCTGATAGGCAGAACAATCACAACATCGGACAGTGATTGGTTCTATTCCTCACTATATAAAGAGCTGTGGGTGGTTTGAAGAGTTATAAGAGGACCATTAATACCCATTCGGACACATATTCCTGAGATACCTGATACGACACAGGATTTTCCTGCAAGACCATGACATCACATGGCAAACTGAGGAAGGAAAGGGGGTGTCTGGCAGAGTATGAGACGCAGATCAAAGAGGTGCGTAGTCAGCTTTCAGAGCAGCTGAAGGTGTTGGATGCACAGTTGGAGCAGAAGACACAACAGCTCCAGGATCTTAGTGATTATTTACGCCGTCGGGGGGAAATCGAGGCTGAGTATGCACGGTCTCTGGAAAAACTCAGCGAGAGATTCACCCTTAAGACCAAAAAGAAGGAGCATACGGACCAGTCTGTGTCCCAGTGCTGGTCAGTGCTGCTAACGCAGACCAAGCAGGAGAGCCGGGACCACAGCTCGCTCAGTGAGATCTGCAGCACCACCTTCACCCAGCGCCTGTCTCACTGCGTCGAAGACACACACCGCCTGGCCAAGaagAGTAAAGAAGTGGGTCTGCAGATGCAGGATGAACTCCTAAAGGTCACCACAGAGCTGCAGACGGCTCTAAAAACTTATCACCAGTATCACTCCGAATGTCTTGCTGCTGAGGGCAAACTCAAAGAAGCTGCAAGACTGGAGGAGAAGCAGACTGGCAAGGGGTCTGAACTCAGCATTGGCCAATCGGGAGGGCAGAGGCGCAGCTCAGTAAAGAAGATGGAAAGGCTAATGGAAAAGaGGCAAGGGAAAGTACAAGAAACCCAGCTGAAGTGCACTAAAGCTCGCAATGACTACCTGCTCAACCTCGCAGCAGCCAATGCTGCCATGAATAAGTACTATCTTGAGGACATATGCACTCTGATTGACTGCACGGATCTTGGCTACCACCTGTCTGTGGCACGGGTGATGCGTGGCTACCTGTCCAACAGAAACCGGGCGCAGCAGAACCTGGAGAATGGGTTGCAGCAGCTTGAAAAAGCGGTGAATGCTATGGACCAGGGCCAGGACCGAGATGCCCTGCTGCAGGCCCACAACTCAGCCTTCTGCCTGCCATTCCGCTTTCAGCACCAGCCACACGAGGGAGAccagGTCTGTGAGGTGAGTGCTGACTGTCAGGTGAGGTATGAGATGGAAACCAGATACCAGCAGTTGCAGTCCAGACTGGCTACCGTTACCCTGGAAACAGAGGAGGTCAGTAAAACTCTCAAGGCGACCTATGCTGCTCTACTGGAGAGTATCTGTGATGATGACTGTAACCCTGCTCCTGATGTCTCAGCGAACCTATCACAGGAGAGCACAGGCGATGGCCCTAACACCAAGCTGAGCTTAACCAAGCGCAGAGCCAATCAGCAGGAAACAGAGACCTTCTATTTCAACaaagtGAAGGAGTATCTCAGTGGTAGCTCTCTGATTTCCAAACTCCAGGCCAAACATGACCTGTTCAAGGAGGCCATACAGAAAGCTGAGGCAGTTGACAGTGATCCCTCCAGAATGCCGTCTGGTAGGTCAGTGCGTGTGCGGAAAGCCAGACCTTGCTCCCAGTACAACCACAAACTCTTCTCTGGAGACATGCTGTCCTTCATCCAGAGCTCTGGGCAGCAGATCCCCTTAGTGGTGGAAAGCTGTATTCGCTTCATCAACCTCCATGgTCTGCATCACGAGGGCATATTCAGAGTGCCGGGCTCTCAGAGCGAAGTCAATAATATCAGAGATGCATTTGAAAGAGGGGAAGATCCTTTGACAGACAGTGAGTGTGACATTGACTCAGTAGCAGGAGTTCTGAAACTGTATTTCAGAGACCTGGAGAAACCTCTCTTCCCAGAGGAGAGCTTCAGTCAGCTGATGGAGTGTGTCCAAATTGAGAACATGGCAGAGAGTGCAGCTCAGTTAAAGCTAGTGGTCTCATCCTTCCCCAGACCCCTCATCATAGTGATGCGCTATCTGTTTGCCTTCCTCCATCAtgtttctCAGTACAGTGATGAGAACATGATGCAGCCCTATAACCTGGCTGTGTGCTTTGGGCCCAGTCTGCTGAGAGGTGGGGCCGAGTCGGGTGATGCAGTAACTCTGCAGCCCCAGATTAATGCCCTGGTTAAGACCATGATCCTCCAGCATGAGAGCATCTTCCCCAGCCCTGCTGAGCTTCCAGGCTCTGTCTATGAGAAATGCATGACCCTGGAACAAGAATACTGTGAACCTATTACAGAGGAGGGTGAAGGAGAGACTGAGCATGCTCCAAGTGAGGATGCCGAGCTGTCATTCAAGCAGGGGGACCACGTCCTACTCCACAGCAAGGCCTCTGCTGACTGGTGGAAAGGAGAAGTAGGAGGAGTCAAAGGTCTCATTCCTCATAAGTACATCAGTGTGCCTGAGGGGGCGGAGAGAAAGCAGGAGCGAGGGAAGAGGGAGGAGAGCCGAGGCGGCAGCACGGGAAATCTAGCTGATGAGCAGCAGGCTGAACACAGCACCCGGATGCGGGTGAACAGTGATAGCGCGTCTCTGCCGGGAAGGCAGCGGACCGCCAGTGGAAGTGGTGTTGTGGTAGGAGAAGGAGGGGGCAGTGGAAACATCAGCCCAATACGCAAATTCCCCATGCAGGTACCAGAGGGCCGACTCTTCTTCCCGCAACAATCACCTGGCATGGCCCGGCAATTCACAGGtctaCAGGAACGGAGACATACCTTGGACAGTGTCAGGCCCATTGGAGGAAcagcagaaagacagacagcgCAGTCAGTTGATAAGGAGGTCACCCGGCAGATGAACTCGGTATTCAAAGAGCTCCTTTCCCGGCAACCTCCTCAAGACAGTAGTGTTTCACCAGCTatgtcctcctcctcttcctcctcctcctcctcctcctcagtgtCCACTGCACCTTCTCGGCAGTCCATAAAGAGGGGGGCAGGATTCGGCCTGCGCAGCCGAGGCCTTTTCAAACCCTCCGACCAGCAGGACTGATAGAGGAGGgataaaagaaagagagcagaaaATGCATAAATGGAAGGCAAGGGCAAGAGCTAACATACAGCAgagattaatatattttttctaaagTATAATATGATGTTTGTGAGACCTCAATTCTGAAAAAATTTTGTTTATGAAAAGTGACTTTGGTTCATGTAGTGCCAGTGACTTAGCCTGTCATTCACAATGGTATTGAAACTATTCACTGGTCTTGCAACTGGTTTTGTTTGTGCTTAACATAAACTTAATGGTACGTTAATGTAGAACCTTTTTCTATAATTTGTTTTTGCCCCGTTACAATGATCATTCATTATAGTGATGTGCAGTGGAGTGACTTAATTCTATCCTTGCATTCATACACTGTTTTTAACATGCCCTTGCAATGGTGCCTCATGTATGGTACCCAGTTTTTTCAACCAGAATGCACTTGCTTGCTATGTGGCTATGTAGCACCCAATTTGAACTTACCAAATGCTATTTTCAAATATTCTTGTGTCTTCTGGCCAATATCTAGGAATATTCTACAGTTGTTTTTTCTAAATCCCTCAAGTCTCCAAGACTTCATCCCACAGCCCACTCACAGGTGCTGTTCATTCCCTTAAGGGGAAATAATGTGAAAGTTAATGAGGGCATGTTAAAAGCAGTTCTGGAAGGCAGCAATTTATTGAAGTGTAACTTTCATTATCATTGGGACTTATTGGTTTCTCCCTACAAACTCAAAGATCCACTGCTTTACTGCATTAATGCAATGAGTGTGTCATCTATTACTCATAGAGGGAACACGACTATAAACATAAATTTCCATTCTGGCTGCAACAGGAATAGACAActattttttgaaaattaatatttttatagtaattatgttttttttaatgattatttttatttccaagTTGTttgcttaaattttttttttcattttgttagaTGTTTATATTTGTTGACCTGAtcttattgaatttttttttttttttttttttttaaaaactcattcTAAAGAGGAGGAGATGCATTGAAACAAATCAAATCCCTTACCTTAAAAAACAGAACAATCATATTATCAGCTACAAGTCtccatttattaaaacaatatagCCACTGTTATGAATACAGGACTATCCACTGAAAATGATGGAATATGCAATTTAATCTAGGACTAGGCTCTGCAAAATAGTCACAGGAGAAAAAACGAttacaaaaaagcagaaagaaagtgGAAAGACCTTATTTTGGTTATATCATACATTAGcgtgattttttccccatagTCTTTATGCAATCATATGTGTAATGTGAAATCTTCAAGTCAAAGATCATTGTACAAAAAGTGCAATAAGTGACAcgtggacacacacatgcaaaaacatCTCATGTAGGAATGGTGCGATAACCAAAATAAGGGCAACTACAGTATGTTGCTACACTTCACCCCATCAACTTATCTTATCTTTGTCACGCACAAAAAGTCTGCTGGATATCTGGGAAGACAAGTGTCTATGATATATGTGATAGCTCAGGAGCACctagagagagggacagagataAAGGAAGAGCTGTAGATGAGAAAGGAAATGATTGACAGGACTGACCAAACTGTGAACGAGCTGATGCAACCACAGGTAGTACAGCACCACTTTCACTTCCTACTACACCCAAGTGTACACATCTCATGGGTTTCCCCTGCTCTACTCCACAGAGAAGGGGGAGAGCTATGTTGACTAAAAAGCAGCTTAGCCTGTAAGGTTGCATACAACCCATCAAAGACAAGCCAGTCTGACTGCGCCTGATTCATGTCTGGTTCAAGTATGCAAATTTGAGAAAAATTGGCATTTGTGCCACTTTCAAGGATGACACAAACATGAATTGAGAAAATACCACAATCCTGTCAGTCCAGTGCATTCCGTACAGGAAGcttgtttatttgattattaatcCTAAAGATTGATGTGAGTGCATCTGGAATCCAAGATTAGACTAATTATTAGGCTAAAGAACCTTCAAAAGCTCAAATAGTCAGCAAATATTGAAACAAGTGAGGAAAAACGACCACGAGGTTTGCTTTGGTCTTATAGGTGTAGTTGTAATATGCAGCCTTACAAGCTGACTGGCCTTTTAGTCCATAGCTGTTGTACGTTTCTTCTTTTTGTGCCACTCACTCCTATATCCTTTCAGAAAATGTGTTTCATAATGTGTTACATAATGACAAATGTGTTACATAATgacttgttgttgttgtatgaCTTGCAATATTATCAcaataaatgatgtaaattcTAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299793 lncRNA upstream 4050 11470051 ~ 11479369 (+) False zgc:103759
TU299791 lncRNA upstream 20662 11461714 ~ 11462757 (+) True G253248
TU299761 lncRNA upstream 68785 11392434 ~ 11414634 (+) False wu:fa11c10
TU299755 lncRNA upstream 106799 11372995 ~ 11376620 (+) True G253212
TU299753 lncRNA upstream 111067 11370703 ~ 11372352 (+) True G253210
TU299813 lncRNA downstream 86754 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 221290 11729040 ~ 11729292 (+) True G253301
TU299903 lncRNA downstream 275158 11782908 ~ 11784064 (+) True G253329
XR_004579731.1 lncRNA downstream 289507 11797257 ~ 11799304 (+) True LOC117599271
TU299904 lncRNA downstream 290087 11797837 ~ 11799302 (+) False LOC117599271
XM_026921373.2 mRNA upstream 4043 11473295 ~ 11479376 (+) True zgc:103759
XM_026921241.2 mRNA upstream 29434 11444394 ~ 11453985 (+) True trpc4apb
XM_026920082.2 mRNA upstream 45774 11429838 ~ 11437645 (+) True nsfl1c
XM_026921394.2 mRNA upstream 73795 11392610 ~ 11409624 (+) True wu:fa11c10
XM_026921393.2 mRNA upstream 73795 11400036 ~ 11409624 (+) False wu:fa11c10
XM_034311970.1 mRNA downstream 1752 11509502 ~ 11512493 (+) True zgc:158296
XM_026920851.2 mRNA downstream 8639 11516389 ~ 11528319 (+) True ikbkg
XM_034311966.1 mRNA downstream 8639 11516389 ~ 11528319 (+) False ikbkg
XM_034311967.1 mRNA downstream 8640 11516390 ~ 11528319 (+) False ikbkg
XM_034311968.1 mRNA downstream 8641 11516391 ~ 11528319 (+) False ikbkg
XR_003403199.2 other upstream 67970 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 67970 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 215736 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 223501 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 246057 11231429 ~ 11237362 (+) True oard1
TU299947 other downstream 384400 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 605872 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 633737 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 858993 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1329301 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile