RNA id: TU299793


Basic Information

Item Value
RNA id TU299793
length 1412
lncRNA type sense_over
GC content 0.42
exon number 3
gene id zgc:103759
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11470051 ~ 11479376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTGACAAGTGCTTGGGGGCACGAGGCCAGACACTTGAGCAGCCATCTGTTTCCTgccttgctgtctctctgttgTATTCCTACACCCCTTAGATGGACAACACACACTCCAGGCAGGGCTGCATACCGTTCAACAGCACTCTGCATGGCCTGACACTTAGCAGCTTGTTTTGGGAATAAGAAAACTGCAGGTTAGTCAAACCCTCAGAGGAGAGTCTGGAGGCAGGGCTGAGCAGAGAGCTACAGGAGGAGTTGGGGGCGGCAGTGCCAGTGACCGCGGACGACTATGTGTCCTCTCACCTTGCTCAGTCTCCTCCCCGCCTCATCTTACACTTCTATAGCAAGAAGATTACAGAGGCTGAGCTGCTAGAGATCGAGAGAGCTGCCGTCTCTAATGCTGTGGATCATGGCTTAGAGGTGTTGGGTCTGACTAGAGTACCCCTCTATACCTTGAGGAATGGTGGTGGTCTTCCTTGGTTCCTGTCTCACTCATTCATCAGCAACTCACGAGCCCAGCTGCTGGAGGCACTGCAGCGTTTGGGCTTGGTGTCACCTCAGACTCTGAAGGAAGCAGTTAAAAAGGCAGATGAGATGAGACACACGGTTAAATCTGATCCACACTGACATTATCTCTGTGAACCTGCTGTCATCAAAATGAGCAGAACAGCCGTACTGTTCCAGACTTCTGCTTCCTCTCTATGGATCCTTCTTTTGTCTTTATGCCATTTTACATACTAAACGACCAGAATCTGTTCTGATCACACATTTGGTCATGTATGAAGAAGAATTAGAGCTTATTAATCTATGCACATGCTAATGTGAAATGCATGAACATGTgaactgtgtatatatagtatatgattTGTAAACCATTGTGGGCCCTCTGCTCACCTGGTTCTTGAATGGAATGAAGTGACCTGCAGTAAAGGCTTTAATCTGAgaattttggtttattttaaggGAATAAGCTTTTGGCTTGAGTCCATATAAGTGATCATAAATAATACTGTACAGCTGGTCTTTTTGTCATTTCACATCTGGAATGTTAATGTAACAGTTTCAAGTGTgaacacagaaataaattgaTGCTTATGtaattcatgtatttattttctgctAATCTGCAGACCAGGCCAGAAAAGATTTATTGATGCTTCATTGTTGAAACATGTTAAGATTCTGAAACTAAAAAATAAGTCCGAACATGCTCTGTAAGAGGTATTCAAATAATTCTCCAACAAAACAGTTATTTCTAAGATGGATTTCTtttctaaaaagaaagaattgatccaacagaatgaaaaattaaaagaatatgAAATTAACAAATGTTCCTTTTGGTCTGTATACAGAGTGAGgtcctgtctgtctttatcaTCATATAATATTCAGTAATAAAAGGACACTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299791 lncRNA upstream 7294 11461714 ~ 11462757 (+) True G253248
TU299761 lncRNA upstream 55417 11392434 ~ 11414634 (+) False wu:fa11c10
TU299755 lncRNA upstream 93431 11372995 ~ 11376620 (+) True G253212
TU299753 lncRNA upstream 97699 11370703 ~ 11372352 (+) True G253210
TU299681 lncRNA upstream 223189 11245898 ~ 11246862 (+) True G253151
TU299787 lncRNA downstream 27089 11506458 ~ 11507627 (+) False arhgap4b
TU299813 lncRNA downstream 115135 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 249671 11729040 ~ 11729292 (+) True G253301
TU299903 lncRNA downstream 303539 11782908 ~ 11784064 (+) True G253329
XR_004579731.1 lncRNA downstream 317888 11797257 ~ 11799304 (+) True LOC117599271
XM_026921241.2 mRNA upstream 16066 11444394 ~ 11453985 (+) True trpc4apb
XM_026920082.2 mRNA upstream 32406 11429838 ~ 11437645 (+) True nsfl1c
XM_026921394.2 mRNA upstream 60427 11392610 ~ 11409624 (+) True wu:fa11c10
XM_026921393.2 mRNA upstream 60427 11400036 ~ 11409624 (+) False wu:fa11c10
XM_034312153.1 mRNA upstream 100327 11345536 ~ 11369724 (+) False bcl2l1
XM_026920331.2 mRNA downstream 4050 11483419 ~ 11507750 (+) False arhgap4b
XM_026920333.2 mRNA downstream 4050 11483419 ~ 11503952 (+) False arhgap4b
XM_026920330.2 mRNA downstream 4051 11483420 ~ 11507750 (+) True arhgap4b
XM_026920332.2 mRNA downstream 4051 11483420 ~ 11507750 (+) False arhgap4b
XM_034311970.1 mRNA downstream 30133 11509502 ~ 11512493 (+) True zgc:158296
XR_003403199.2 other upstream 54602 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 54602 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 202368 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 210133 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 232689 11231429 ~ 11237362 (+) True oard1
TU299947 other downstream 412781 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 634253 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 662118 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 887374 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1357682 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile