RNA id: XM_026921373.2


Basic Information

Item Value
RNA id XM_026921373.2
length 1652
RNA type mRNA
GC content 0.41
exon number 4
gene id zgc:103759
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11470051 ~ 11479376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTACACTGTTTTAACGTCTCACTTTCCTGATTTCCTAATTTCgttgtatacagagatatacaatgacaataaaggctttcattcGTTCTTGTGGTCAAATATGTTGCAGGACTCATATTTTGAAATTCAACTCTATTAGACCGCTGTAGTTGTCTTCACACTGTTATTGGTTGTCAGTTTTCTAAAGTGACGTTTATCCGTAAAGTTCTTTCCCTGATGAGCTAAACTCgctgtgtaattacagtgtgaaATGGCTGGAAGAGACATAAACAGAGAAGATGCGCTGTCGCGGCTGGACCACAAACACGCCTGTCACATCCTGCTGTACGCAGATAGCAATGCTAAACTCTTCGGCAAAATCCCTATTAAACATATCGTGCTGATGCAGATGCGTTTCGATGGCTTACTTGGCTTCCCAGGAGGGTTAGTCAAACCCTCAGAGGAGAGTCTGGAGGCAGGGCTGAGCAGAGAGCTACAGGAGGAGTTGGGGGCGGCAGTGCCAGTGACCGCGGACGACTATGTGTCCTCTCACCTTGCTCAGTCTCCTCCCCGCCTCATCTTACACTTCTATAGCAAGAAGATTACAGAGGCTGAGCTGCTAGAGATCGAGAGAGCTGCCGTCTCTAATGCTGTGGATCATGGCTTAGAGGTGTTGGGTCTGACTAGAGTACCCCTCTATACCTTGAGGAATGGTGGTGGTCTTCCTTGGTTCCTGTCTCACTCATTCATCAGCAACTCACGAGCCCAGCTGCTGGAGGCACTGCAGCGTTTGGGCTTGGTGTCACCTCAGACTCTGAAGGAAGCAGTTAAAAAGGCAGATGAGATGAGACACACGGTTAAATCTGATCCACACTGACATTATCTCTGTGAACCTGCTGTCATCAAAATGAGCAGAACAGCCGTACTGTTCCAGACTTCTGCTTCCTCTCTATGGATCCTTCTTTTGTCTTTATGCCATTTTACATACTAAACGACCAGAATCTGTTCTGATCACACATTTGGTCATGTATGAAGAAGAATTAGAGCTTATTAATCTATGCACATGCTAATGTGAAATGCATGAACATGTgaactgtgtatatatagtatatgattTGTAAACCATTGTGGGCCCTCTGCTCACCTGGTTCTTGAATGGAATGAAGTGACCTGCAGTAAAGGCTTTAATCTGAgaattttggtttattttaaggGAATAAGCTTTTGGCTTGAGTCCATATAAGTGATCATAAATAATACTGTACAGCTGGTCTTTTTGTCATTTCACATCTGGAATGTTAATGTAACAGTTTCAAGTGTgaacacagaaataaattgaTGCTTATGtaattcatgtatttattttctgctAATCTGCAGACCAGGCCAGAAAAGATTTATTGATGCTTCATTGTTGAAACATGTTAAGATTCTGAAACTAAAAAATAAGTCCGAACATGCTCTGTAAGAGGTATTCAAATAATTCTCCAACAAAACAGTTATTTCTAAGATGGATTTCTtttctaaaaagaaagaattgatccaacagaatgaaaaattaaaagaatatgAAATTAACAAATGTTCCTTTTGGTCTGTATACAGAGTGAGgtcctgtctgtctttatcaTCATATAATATTCAGTAATAAAAGGACACTGTTGGGGGAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K16855 NUDT16; U8 snoRNA-decapping enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299791 lncRNA upstream 10538 11461714 ~ 11462757 (+) True G253248
TU299761 lncRNA upstream 58661 11392434 ~ 11414634 (+) False wu:fa11c10
TU299755 lncRNA upstream 96675 11372995 ~ 11376620 (+) True G253212
TU299753 lncRNA upstream 100943 11370703 ~ 11372352 (+) True G253210
TU299681 lncRNA upstream 226433 11245898 ~ 11246862 (+) True G253151
TU299787 lncRNA downstream 27082 11506458 ~ 11507627 (+) False arhgap4b
TU299813 lncRNA downstream 115128 11594504 ~ 11633295 (+) False hsd17b10
TU299869 lncRNA downstream 249664 11729040 ~ 11729292 (+) True G253301
TU299903 lncRNA downstream 303532 11782908 ~ 11784064 (+) True G253329
XR_004579731.1 lncRNA downstream 317881 11797257 ~ 11799304 (+) True LOC117599271
XM_026921241.2 mRNA upstream 19310 11444394 ~ 11453985 (+) True trpc4apb
XM_026920082.2 mRNA upstream 35650 11429838 ~ 11437645 (+) True nsfl1c
XM_026921394.2 mRNA upstream 63671 11392610 ~ 11409624 (+) True wu:fa11c10
XM_026921393.2 mRNA upstream 63671 11400036 ~ 11409624 (+) False wu:fa11c10
XM_026920983.2 mRNA upstream 103571 11345536 ~ 11369724 (+) False bcl2l1
XM_026920331.2 mRNA downstream 4043 11483419 ~ 11507750 (+) False arhgap4b
XM_026920333.2 mRNA downstream 4043 11483419 ~ 11503952 (+) False arhgap4b
XM_026920330.2 mRNA downstream 4044 11483420 ~ 11507750 (+) True arhgap4b
XM_026920332.2 mRNA downstream 4044 11483420 ~ 11507750 (+) False arhgap4b
XM_034311970.1 mRNA downstream 30126 11509502 ~ 11512493 (+) True zgc:158296
XR_003403199.2 other upstream 57846 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 57846 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 205612 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 213377 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 235933 11231429 ~ 11237362 (+) True oard1
TU299947 other downstream 412774 11892150 ~ 11900364 (+) False G253367
XR_003403157.2 other downstream 634246 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 662111 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 887367 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 1357675 12837051 ~ 12850995 (+) False rbbp8l

Expression Profile