Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU299904 |
| length | 299 |
| lncRNA type | intronic |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC117599271 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11797257 ~ 11799304 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU299903 | lncRNA | upstream | 13773 | 11782908 ~ 11784064 (+) | True | G253329 |
| TU299869 | lncRNA | upstream | 68545 | 11729040 ~ 11729292 (+) | True | G253301 |
| TU299813 | lncRNA | upstream | 164542 | 11594504 ~ 11633295 (+) | False | hsd17b10 |
| TU299787 | lncRNA | upstream | 290210 | 11506458 ~ 11507627 (+) | False | arhgap4b |
| TU299793 | lncRNA | upstream | 318468 | 11470051 ~ 11479369 (+) | False | zgc:103759 |
| TU299946 | lncRNA | downstream | 92848 | 11892150 ~ 11896137 (+) | False | G253367 |
| TU299948 | lncRNA | downstream | 92848 | 11892150 ~ 11900364 (+) | True | G253367 |
| TU299949 | lncRNA | downstream | 92848 | 11892150 ~ 11900364 (+) | False | G253367 |
| TU299950 | lncRNA | downstream | 92848 | 11892150 ~ 11896137 (+) | False | G253367 |
| TU300200 | lncRNA | downstream | 139777 | 11939079 ~ 11941237 (+) | True | G253548 |
| XM_026920168.2 | mRNA | upstream | 30644 | 11761199 ~ 11767193 (+) | True | mfsd4ab |
| XM_034312012.1 | mRNA | upstream | 39962 | 11752133 ~ 11757875 (+) | False | nucks1b |
| XM_026921139.2 | mRNA | upstream | 39962 | 11752134 ~ 11757875 (+) | True | nucks1b |
| XM_026921033.2 | mRNA | upstream | 83027 | 11700784 ~ 11714810 (+) | True | tafa1a |
| XM_034311550.1 | mRNA | downstream | 9689 | 11808991 ~ 11821760 (+) | False | pm20d1.2 |
| XM_034311551.1 | mRNA | downstream | 9690 | 11808992 ~ 11821760 (+) | False | pm20d1.2 |
| XM_026921152.2 | mRNA | downstream | 9691 | 11808993 ~ 11821760 (+) | True | pm20d1.2 |
| XM_026920869.2 | mRNA | downstream | 101096 | 11900398 ~ 11907918 (+) | True | tfip11 |
| XM_026921106.2 | mRNA | downstream | 222354 | 12021656 ~ 12023438 (+) | True | bhlhe23 |
| XR_003403199.2 | other | upstream | 382388 | 11392592 ~ 11415449 (+) | False | wu:fa11c10 |
| XR_003403198.2 | other | upstream | 382388 | 11400036 ~ 11415449 (+) | False | wu:fa11c10 |
| trnaf-gaa_28 | other | upstream | 530154 | 11267611 ~ 11267683 (+) | True | trnaf-gaa_28 |
| trnah-gug_14 | other | upstream | 537919 | 11259847 ~ 11259918 (+) | True | trnah-gug_14 |
| TU299671 | other | upstream | 560475 | 11231429 ~ 11237362 (+) | True | oard1 |
| TU299947 | other | downstream | 92848 | 11892150 ~ 11900364 (+) | False | G253367 |
| XR_003403157.2 | other | downstream | 314320 | 12113622 ~ 12121372 (+) | True | trim101 |
| TU300294 | other | downstream | 342185 | 12141487 ~ 12143527 (+) | False | ppdpfb |
| XR_004579730.1 | other | downstream | 567441 | 12366743 ~ 12384574 (+) | False | LOC113530266 |
| XR_003403145.2 | other | downstream | 1037749 | 12837051 ~ 12850995 (+) | False | rbbp8l |
