RNA id: TU299946


Basic Information

Item Value
RNA id TU299946
length 3790
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G253367
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11892150 ~ 11900364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGCCATCAAGCCACAACTTTATTTCTCTTGGGTATAAATTGTACAAATAGTGTAGATTAATTCAGCAACATCTCATTCTGCCCTGCTCTGATATCCACCTACATCGTCAGTTCATAATGGCATTGACAATGTCGTTGTTGTTATTCTTCAGTGCGCGAACAGCCTTTGCCCGTGATACGTTGGCTTGAGACATGACCAGCTCAATGTCCTTAACCTCTACTCCGGTCTCATCaaccttaaaataaaacagatttatgaCTTTTAAAATGTGCCTCCTGCAGAACAAATGCAGATGCCCTTGATGCAGTAAATAGTATTTAGTTAGGCTGAGTATAGCTATAATAAGAGTGTCCTCACCTCTTCCTCTTCGCTTTCCTCGTGTACTGTAGGCGTCTGTGTGCTTTCTTGTATGTTTGATGCTGCTTCTCCCTGGACCTTGAACTTCTCTGCAGCAGCCAGCTGAGCTTGCTGGGACAAGTCCTCGATCTAAGAAGCACAAACAGTAATTGATTTATACTATTGTGCAAATTATTTTGCTTTGAATtcaaatgcagaaaaacactGTGTGACCAAAATCCCCTTTCAGAACAGAAAGTTTGGCTTCATCAGTCTCAGAAGAACGAAAGTCAAACTGTTTAAATCATCACAAAGAGGAAGTAAAGGTGCGGAAAAGTGCTTCAGCTTTTACTGTGTGACGTACAACCATTTCTTGAATATCATGCACTACATAATCAATGCTAACCTTAGCCTCTCCGAAGACAATATAAGTGTCTGAAGCGGGACTTTTGTAGACGTCTGGTTTGGTGATGACAAACAGAATATTCTTAGACTTGCGAATGGTTACCCTGGTAACTCCCGTCACTTGTCTGAGACCCAGTTTGGACATTGCCTGGAAAAATATAAGCCAGATGAAAAACTTAGCTTTGgataacaaaaccaaaaaacaatcATGAGAAAACCTGTCATTTCCacctttcttgctttcttttcgCTTCTGCTTTGTTTGGCTTTACTGACAGGCTCCTCGTCAATTTCGGCAGCAGCTGCAAGCTGAGAAAGGGATAAAACAGCTTTCAATATAATTTTCTTTGATATCAgaatcctttatttttttccccaaattatttcacaaaaaaattctacatacattaaaaaatataaaccatAATACCTACAAAATTGATAGATTCCATCTTTTAGGTAAGTGTTACGCATGTATAGGTGCAGTCCTACCTGCGCCTGCTGCGTCTGTGTCTGTGCAGAATCCTGCTCCTCCAGTTCAGGAACAGATTCATCACTGTCTGATTCAGTGCCGGACCCTTTAACATAAAACCCAGAAGCTACTTAATATAAAAGGCAAGAGAATGCATTGCTGAAGTACCATTTTACCTTGTGTCTGCCTCACTAGTAATTCAAAGCTCACACATGTAAAAAAGCATATACTAAAATGTAGATTTGTTTAGAAGGAAAAGACTGGCCAGTGACTTCTCTCTTAATTTCCTGAGTAGAgtttcatgtttaatattaacACTCTGGATTTAAAACCattatactgtttattaattaCATAACTGTAATATTACATATAATCTAAACCATTTGTACATGGGCTATTGTCAAGaaccattattaaaaattaattcagTGTATTAATCCAGTGGGAAATAATCACTTTCACCTTAAGCGTGAAACCAATAGCAATAAGTAAATAGGTGCTCTgcaaatcataaaaatatactGGGCATAAAGTAAGcctatttttaaacaaattctcTTTTGTCCAAGTTAAAACCACATCATTAAAATTGaggtttaatatttatttaacattaaaagcaaTGGCAAAAGTACTTTTCtgtctttacatttttactgcaTCAATGTCCTTAAAACACTCATCTTTTTTCAACCGAATGGCTAAGTCTGGTTGCCTGTTCGTAGACACATATTTAAAGCTGCTCAATTTGTCGCAGCTCTCCACTGTTTGGGGAAACTCACAGCGCgataaaaaacagaattaatcGTGCAGCCACCATgactacactgaaaaaacagtCATTCAAACCCACAGTCCAGGACAAAggcacagaaagacagatggacagacagagagaaataccCTTGTCATTCTTGATTACTGGTTCCGGTTTGGATGGGGCTTTTACTGGTGTAGGGTCAGGCTGAGATTTAGCAGGTGTAACAGTGGCTTTGGGACCAGCTGGCGGCACAACAGCTTTAACTACAGGGTCTACTTTAGGTGAAGCCTCGACCACAGGTTGGGGTTGGAAAACAGGCATTGTGGCAGGCTTCTCAGGTGGAATAAGTGGAGGGAGgtcgtcctcctcctccagagGTGAAATGGAAGACTCAGGAGTTGCTGCCAGAACAGTAGAGGGAGCAACGCTTGGCTCCTTTTGGGGGCCTCTGCCTTTACTTTAGAAGCAGTAGCTGGAGCTGACTTTGCTTTTTGCACTGGAGATAAGGCAGGTACAGGCTGAGCCTTTGGAGATTCAGGAGCAGCTTTGGGTACTTCAGCACTCTTCGGGGTTTCTGTAACAACTGCAGGAGCCTTTGGGACTTCTGGCACCTTAGGTGCTACTGGGGTCTCATGAACAACCTTCGGGATTTCTGGTACTTTGGGTGGGCTACATGCCACAACCTCAGAATATGATTTGGGTGCGTGGGCAGCTGACTTGGAAACTACTTTAAAAGCCTCAGGAGCTACAGTAGTTTTAGGAGATACTGGAGTAGGTGCTTCACCCTCTAATGGTTTTGCACCCACTGGGGCAGGGACAGCAACATTAGAAGTGGCTGGTGCAGGTGCAACACTTTTCACCTGCAGCACATCAACTGGAGTTGGGGCAGCAGCTTCGTCCTTCAGTAGTTTTGTCTTCACTGGAGCTGGGGCAACATCTTTAGCTGAGGCTGGTGCAGGACCCTTCACCAGCATCACATCAACTGGAATTGCGGCTGGGGCAACTACTTCACCCTTCACTGGTTTTGCCTCCACTGGAGCTGGGACAACTTTTGCAGCACCTTTCACCTGGTTTACCTTTCCTGGAGCAGCAATAGTACCTTTAGGAGAAGCTACAGTAGGGCCTGCACCTTTTGTTGGTTTTACCTCCACTGAAGCTGAGGTAGTTGCTTCAACTTTCTCTGGTTTTGCTTCCACTGGAGCTGGGACATCTTTATCAGAAGCGAGTGCAGGTGCTTCAGCTTTCACTGGAGCAGCTGCTGCACCCTTCTCCTGTTTTGCCTTCACTGGAGAATCAGTGGTACATTGAAGAGAGTCAGCTGCAGGGCCTGCACCTTCTACTAGTTTTGCCTCCACTGGAGCTACACCAGCAGCTTTAGGACATACAGAGGCAGTAGCTACACCCTCCACTGGTATATTAGCCACCTTGTTAGAGGTTGGGGAAGACTCATGTGCTGTTTTAGCCTCTGAGGGTGTAGCAGAAGGTAGGGTTGCCTGCTGAGGTTCAGcaattttaaaatctgctttCTTGGGTTTTGCTTGTTTACCAGCCTTCACAACCTTGGGAACAACTGTCTCAGGTTTCCCTGCACCTGGGGAGCGAGCTGTAGGAGATGCTAGTGGAGAACAAGGTGGGGTGGCTCGAGGGCCAGAGGCTGATTTGGGTGAAGtgggagaagaggaagaagcgGAAAGCGAGGAGCGCTTCCGGCGGCCCACAGGAACAGGCTTGGGGGCAGAAGAGTGTGGAGATGAGCCAGCCTTAGCCCCTTTAGTCTTTGGCTGAGAGACAGCAGGAActgaagcagcagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579731.1 lncRNA upstream 92846 11797257 ~ 11799304 (+) True LOC117599271
TU299904 lncRNA upstream 92848 11797837 ~ 11799302 (+) False LOC117599271
TU299903 lncRNA upstream 108086 11782908 ~ 11784064 (+) True G253329
TU299869 lncRNA upstream 162858 11729040 ~ 11729292 (+) True G253301
TU299813 lncRNA upstream 258855 11594504 ~ 11633295 (+) False hsd17b10
TU300200 lncRNA downstream 42942 11939079 ~ 11941237 (+) True G253548
XR_004579667.1 lncRNA downstream 50195 11946332 ~ 11974544 (+) True LOC117599216
XR_004579668.1 lncRNA downstream 95503 11991640 ~ 11992121 (+) True LOC113530280
TU300249 lncRNA downstream 117142 12013279 ~ 12013495 (+) True G253593
TU300257 lncRNA downstream 186906 12083043 ~ 12083656 (+) True G253599
XM_034311550.1 mRNA upstream 70390 11808991 ~ 11821760 (+) False pm20d1.2
XM_034311551.1 mRNA upstream 70390 11808992 ~ 11821760 (+) False pm20d1.2
XM_026921152.2 mRNA upstream 70390 11808993 ~ 11821760 (+) True pm20d1.2
XM_034312005.1 mRNA upstream 83448 11785870 ~ 11808702 (+) True lemd1
XM_026920168.2 mRNA upstream 124957 11761199 ~ 11767193 (+) True mfsd4ab
XM_026920869.2 mRNA downstream 4261 11900398 ~ 11907918 (+) True tfip11
XM_026921106.2 mRNA downstream 125519 12021656 ~ 12023438 (+) True bhlhe23
XM_026921197.2 mRNA downstream 193410 12089547 ~ 12112153 (+) True dnajc5ab
XM_026920441.2 mRNA downstream 217485 12113622 ~ 12121372 (+) False trim101
XM_026920438.2 mRNA downstream 217485 12113622 ~ 12118875 (+) False trim101
XR_003403199.2 other upstream 476701 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 476701 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 624467 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 632232 11259847 ~ 11259918 (+) True trnah-gug_14
TU299671 other upstream 654788 11231429 ~ 11237362 (+) True oard1
XR_003403157.2 other downstream 217485 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 245350 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 470606 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 940914 12837051 ~ 12850995 (+) False rbbp8l
XR_004579688.1 other downstream 2174091 14070228 ~ 14072158 (+) False wfdc2

Expression Profile