RNA id: TU299972


Basic Information

Item Value
RNA id TU299972
length 1443
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G253384
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11362972 ~ 11364414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGAATCATTCACAGACAACACATATCTACATGGAGGCAGAACGATAGAGTCATTTCTTAAATATAATCTCAATCCAGATTTAATCTCGTAAATGTAAGATCGATCACAGTTTTAACATGTGTGTGACTACAACAAGCAATAATTCTGACACGTTTCCCTGTAtggagaaaataacagaaaacctGATCTCAAAATTCTTAATAAtgaaagtctaagggcagataTTGGGGCAGTCaattaacatgaatataaaACTTCAACTTGTAGAACGTTTTTAGTAATTCTTTAGTTAAATGTATTTGTACATCAAGTTCCAAATAAGTATAAATGTTTCAGGGGAAAGTATTAGTGTTTTTGTGTTACTAACGTAGGTGTATGCATCTGATCTCTCATGGATACCACAAAACATCAGGGAAAGGGGAAATATCCAAAATAAATTTAACTGTATTACTCATGTTTTGGAAACTTGAATAAGACtacacaaaaacagttttggTAAGACTTTCTCTCATATCTGTCTTATCCCATGACCTTTATTGTTGGAGTGTAACTGTTGTAGTTTTGCATTGTTCTGTGTATAATGGAGTATTTTAAACACTTACTGACTGCCCGATAACTGCCCTTGGGCTTATATTAAGTAAGTTTTGCGTAAACAGGTTTTcggttcttttctcagtacaaggCAATGTGGCGAAATTTTTGTCTGACACAATCACATATACACTCCAGATATGGCAGGTTATAGATAATGTTGAACAACACTGGAGTGTTCTCTTTGGAGAAGATTACATAAAACAGTACACACTGTATGTGACAGGCAACATGAACAGCAAAAAGAGAAGATGCTTGCAGCTCACTAAACCATAAAGTGCTCTTAGAAATTCCACATCTGCAGCACACCTCTGTAACGGATATAAACACATAGCTTGGTTTCTTTCCGTTTGCTAATCATGTTCAGTTTTACTCAGACTGGTCATGTCTCCCAGTCATGTCTGCCAGTTGACTGAATCCTGCTCCATACAGCCAGGTAGTGAACATGCCCAAACATGCCTCCATCAATACCATCAAGCATGCACAACATCAGCAGAGTACATTTACAACACTATCCTTCTCTGACAAACACCACAGGCAGGTCCTTATCAACCCTGAACACCTACAggttacagtattacagtactATATGAGCAGTGACAGTGGGTGGACAaccacacctgcacacacaaacctcaTCTGCCAGGCGCATGAACTATCCCAAAACACCCAAAGGATGGGAGGGTTTAGAAGACGTGTCCACTGGGATTGCTGCTGCTAGGCAGCGGTGTCTGCACACGTCTCTCCAGAGCACGGAAAATGGGCTCAGACGGAGCCTGGGTGAAAAATCACAAAGGCGTCATTTACACCTTACACTGTACATTatcagtgtatatttttttaatcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299973 lncRNA downstream 1387 11359515 ~ 11361585 (-) True G253385
TU299971 lncRNA downstream 8755 11353502 ~ 11354217 (-) True G253383
TU299705 lncRNA downstream 97823 11264909 ~ 11265149 (-) True G253174
TU299539 lncRNA downstream 271637 11089077 ~ 11091335 (-) False LOC113530615
XR_003403161.2 lncRNA downstream 271686 11089065 ~ 11091286 (-) False LOC113530615
XR_003403134.2 lncRNA upstream 91606 11456020 ~ 11462531 (-) False LOC113530309
XR_003403133.2 lncRNA upstream 91606 11456020 ~ 11462531 (-) False LOC113530309
TU300067 lncRNA upstream 166290 11530704 ~ 11533297 (-) True G253444
TU300066 lncRNA upstream 167860 11532274 ~ 11533297 (-) False G253444
TU300041 lncRNA upstream 175767 11540181 ~ 11542479 (-) True G253430
XM_026920309.2 mRNA downstream 85296 11274090 ~ 11277676 (-) False fkbpl
XM_026920307.2 mRNA downstream 85851 11274090 ~ 11277121 (-) False fkbpl
XM_026920306.2 mRNA downstream 85853 11274090 ~ 11277119 (-) True fkbpl
XM_026920308.2 mRNA downstream 85855 11274090 ~ 11277117 (-) False fkbpl
XM_034311599.1 mRNA downstream 85855 11274090 ~ 11277117 (-) False fkbpl
XM_026921201.2 mRNA upstream 7828 11372242 ~ 11376560 (-) False LOC113530844
XM_026921202.2 mRNA upstream 7828 11372242 ~ 11376409 (-) True LOC113530844
XM_034311706.1 mRNA upstream 73635 11438049 ~ 11444255 (-) False emp3b
XM_026921110.2 mRNA upstream 73635 11438049 ~ 11443931 (-) False emp3b
XM_034311707.1 mRNA upstream 73635 11438049 ~ 11443930 (-) False emp3b
trnan-guu_24 other downstream 89569 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 103858 11259043 ~ 11259114 (-) True trnae-uuc_4
TU299470 other downstream 347342 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 724254 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 893438 10460694 ~ 10469534 (-) False usp21
TU299993 other upstream 91607 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 91607 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 192473 11556887 ~ 11568530 (-) False avpr2ab
XR_003403206.1 other upstream 527934 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 528513 11892927 ~ 11893002 (-) True LOC113530993

Expression Profile