RNA id: TU299973


Basic Information

Item Value
RNA id TU299973
length 2071
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G253385
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11359515 ~ 11361585 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACTTCTAACAGTTTCTAATGTAACATACTGTGTTTTAGACAAAAATGTCTAGCAAACTGTTGGCTAGTGTTTCAGCTATGAGCTGAGGTGTTATGTCCACACATTGCCCCTAACAGATGTCATGAGTCTTACTAacgtttttattttctgatgacCACAGGTTACTGCGTATTGTGCTATAGTTTCGTCAGCGTTTCCACAGGTTCAATAAAGACTGATTAATTAGTGTCATCCGTGACCACTAATTAATGCACCTAGTACTCTGTgtgtgcagcaggtggtgggattcgaAAGCATGGGCTCTAGTTACACCATCACGGTGCGTCACGCAACATGATACGCATTACGTTTAAACATACTGCACATACCAACTGGAAACTTTTGTTTTACGAAAGTCAATAAGGACTAGGgacttcttctttttctggctGTTAAGtctactgataaataaaaaaaaaacctgacatcTGCTTGTCTCAGGCacccaggctactgatttgtccatccctgaGCCATTAACTCGATTACTGAAATctgagaaacacagaacagcatCGCTGTCCCTGAATGTAGCTCAGTTCTATTTCAaattcatcatgttttattggATAAGCTTAGCGGAAACAAGCAGAGCTCTGTTCCACTTGTTCCCCTGAACCGGCCCCCCGAACAGAACAATCAGTGCTGGCAGGAAGGGCAGAACTTCCTGACACTCGCTGGAATGCTGCTTGTCAAAGTTTTTCTTTTGGGGGGAGGTGGGGAAAATCAGCTGATCTGAACCAAAAGAGCTGCTTGAAAGAAGGCATGACCTCAGAGCATACACAGGAAAGCAATTCCTGGATTTGTTCGAGTATTCTCGCTCAGTACATATGACGTCACTTTCACAGAATCGTTTTAACACCAAGGCACAGCAGCTTATGTGAGGCAAAGTAGACGTGGCTTCAACGGTCACAGAACAGGATATGTGACAAGATAGGGCTGGATGAGAATTACAGGGCACTTTCAAGATAGAACAGGACGTGAATAGACGTTTGTCCATTTCATCGATCAAAGAACATCGGTCAATAACGTAGCCTGTGTTTACCAGAGTTACATCATCTTCAATAGTGCTGGTCATCATCTTTATCCCCCACAGGTCAGTGACACCAGCATGACTCAGATCATCACCGATGGGTCACCAGACTTCCAGAGAAGTGAAGGTGGTTACCACATATACCAGCCACTTTAGCAaaaaagcagtttctgaaatcatATCCTGTTTCATAAGCAGCCTCGTATCTCAGTGACATCAGTTCAAACCTGACACATCTCGGTCTTCTTTAAGAAGCAGAAGTGTGTGCAGTTCAGCTTTGTGTACAAAGCATATTATGAGGCAATTCCCCAATGGTACAACGTCTTCTTGCGCACCAAGACAACACACACCTAGATAACAGGGTAGTCTGTTCAAAAATAAATCCTGCTACACAGAGTATATGGACTATTAACCAATCACGAAAATAAAAGAACTAAATGTTTGCTATTATAACGATTTTTCCaaaagaatttaaaagaaatggTACTATGACTTTGATAGTAGAGTGATATGTGATAGCAATATCTTATTATCATCTTTGTGGTTTTTAGCTGACTGTTAACTGAGGAGATTGTTCTTATCTTTATTAATGTTGGGAATATTGTTCGTATTACACCTCTAACGTCTACATGACTCCTGTATGTGTTCAGCGTCAGCAGTATAGTCGTGCCAATAAACCTATCTTGAATTGAAGTGATAGAGAGAGCAAGGCATCTGACAATCTCTCTAAGCGTGAAAGCAATATTAAGGAGAGGAAAATGTTGAGAGGCTTATCTCCCATCACTGTGCTACACAGCACACATCCCTTCCACTATTTTAGGTCATATCTCTAGAGCTTCGTCTAAAGGAGGGTTCCTTTCTGTTACTatggcaatgtgtgtgtgtcaggctgtgtgtgtgagcagtatGTTATGTAGAAGTTAAAGAGGAGATTAATGATGTAGAATAGTGGGACTCAGACACTAAACTGTTCTCCATCTTATTACGGAGATGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299971 lncRNA downstream 5298 11353502 ~ 11354217 (-) True G253383
TU299705 lncRNA downstream 94366 11264909 ~ 11265149 (-) True G253174
TU299539 lncRNA downstream 268180 11089077 ~ 11091335 (-) False LOC113530615
XR_003403161.2 lncRNA downstream 268229 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA downstream 268832 11089077 ~ 11090683 (-) True LOC113530615
TU299972 lncRNA upstream 1387 11362972 ~ 11364414 (-) True G253384
XR_003403134.2 lncRNA upstream 94435 11456020 ~ 11462531 (-) False LOC113530309
XR_003403133.2 lncRNA upstream 94435 11456020 ~ 11462531 (-) False LOC113530309
TU300067 lncRNA upstream 169119 11530704 ~ 11533297 (-) True G253444
TU300066 lncRNA upstream 170689 11532274 ~ 11533297 (-) False G253444
XM_026920309.2 mRNA downstream 81839 11274090 ~ 11277676 (-) False fkbpl
XM_026920307.2 mRNA downstream 82394 11274090 ~ 11277121 (-) False fkbpl
XM_026920306.2 mRNA downstream 82396 11274090 ~ 11277119 (-) True fkbpl
XM_026920308.2 mRNA downstream 82398 11274090 ~ 11277117 (-) False fkbpl
XM_034311599.1 mRNA downstream 82398 11274090 ~ 11277117 (-) False fkbpl
XM_026921201.2 mRNA upstream 10657 11372242 ~ 11376560 (-) False LOC113530844
XM_026921202.2 mRNA upstream 10657 11372242 ~ 11376409 (-) True LOC113530844
XM_034311706.1 mRNA upstream 76464 11438049 ~ 11444255 (-) False emp3b
XM_026921110.2 mRNA upstream 76464 11438049 ~ 11443931 (-) False emp3b
XM_034311707.1 mRNA upstream 76464 11438049 ~ 11443930 (-) False emp3b
trnan-guu_24 other downstream 86112 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 100401 11259043 ~ 11259114 (-) True trnae-uuc_4
TU299470 other downstream 343885 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 720797 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 889981 10460694 ~ 10469534 (-) False usp21
TU299993 other upstream 94436 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 94436 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 195302 11556887 ~ 11568530 (-) False avpr2ab
XR_003403206.1 other upstream 530763 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 531342 11892927 ~ 11893002 (-) True LOC113530993

Expression Profile