RNA id: XR_003403134.2


Basic Information

Item Value
RNA id XR_003403134.2
length 2473
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id LOC113530309
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11456020 ~ 11462706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTCTGCCCAACTCTGACCTTGAGGGAGACAATAAAAGAGGGTCAGAGCGCGCGCCTGGGGCAAGCCGAGCCACCGGGAGCCTTCTACAGgtgtgtgtgaggacgaGTCTTGCGGCCCGGAGTGTTTACTGCGTGCCGCTGTATGGAGCTGAGTGAGTGGCGCGAGGCCACCCTGGAGCTGCGCAGACGCAGGGACTGGACGGAAAGATGCATGTCTGGATCCCTGATCAGATGGAGGCCTCAGCATGGAGATTAAAACAAAGTAgatggatggaaagatggaAGGGTCTGTGTTGTCCCCTTCTCCGTGCATCCTCCCTACGGACCTCCTCACGGCTGTTCTGTGTGACAGAGAACCCTAACAAATGGCGACCAGTCTACACTGCTGATGTCATCTCTGATTATAAGAGCGAGCTCAGACGCTTGACCTTATATCTACTCCATAGCTGACAGTGCACACCATGCTATGCTAAAACGTTACCTACACTGCTGGCACTCTGACCAAAGCTACTGATGAACACATGTTTAAAAGGAGTTTGTAAGCAGAACCAGTAAGACACTCTACACATCCCTCCTTCACTAGTTCTTCATAGGATTCTCGACATAGCTGGATTTGAGCTTTATGAGTTTTGAGCAGTTGTGTATCAGTTTCACAACTGACAAACTccagcaggttttttttaacgAGCACATGTTCGTTTTGGAGCAGGAGGAATATAACAGATGGCACTGAATGGACTTTTATTGACTTTGGCTTAGACCTCCATTGACCTCATTGAgAGAATCTTAACAAGCTGATGACCAACCTGAGGAGCACTCAGTCTCACTTCGAATGCTGCAGCATTTCTGTAATGCAGACCTACAAGAACTACTTGAGACTACTGCTAGTACCAACAAAGCACCACATCTTCATTTAGACATTTAAATGGGTACCTCTTCACCTGCTGCTCTAAGGTATGATGGAGGTGTTCCTGGTCCTTCACCACTTAATGGGGTTCTAGAGGACAATTGCATCTACAGGATGGGATTTTCTACCCAAATCTTGTGTGCCAAGTTTAAACAGTGTTATTGAATCTTGAACCCTTCTACCATTCCAAAGGACAAATGGACAATGAGACTATGAGGCTGCAGATAAACTTCTAAGCTTGCTGGATACTGACCACATGCAATACAGgggAAAGCACTGACCTGAGTAAGTGGTTTGGTTAAGCAGGCAAGACAGTCCTTTAGAGCAAATGTAAAAGTCTCTGGATTAAGAGTGACATCCAGGCAGCACTGGAGGAACCTGTTTGGTTGCAGAGGtcaggatgaagatgatgtaGGAAGACCTAAATAAGATGCTGTTCCAGCTCAGCTATGCTAACAAACAGACAGCTGCATCACAAAAACTAGTTCACTACCAACAAAGTAGCCATTTCTCCACCTTACCTTCTACACTGAAGTAATGTGACATCAGCTTCAATATGTCAACAAAACTATACTAACTAAAATGAAGAGATCAATCCAATCAACATGTATCTTTATCTTCTTTATATCTTATCTATAAATAAGCAAGACACATGAAGGCCAAGTAGCATGAACAAATAAAGGAAATGGAGCTTGATGAGTCTCTGCACCAGTGTGAAGGTCTCGAGAAAATCTTGCTGGCTCCTGAACTGGAAAAGCTCCAAACAATAATTGAACAAATCGGCCAAATGTGCAAAGCCTCCTGGAATCCAGTGAgagtgaatattttatatgCCCAGAAGAGAAACAAAACTAGCACACAAATACCACACAGAGAAGTAATAAAACCAATACTGATCTGTCTGTGCACTGATGTTGATTGTGTGCTGAACCAGATAAAGAAGCTGGAACATGTTATCTTGATGGTGGCGGTGATGCAAGGATTTCTGCAATGCTCAGGAGAAGGCCAAGAAACCCTACAAGATAAAGAGTTAGTGCGTAGTGTCTCATCTTAAAGCATTCTGCCTTGCTTGCATTACATATCACAACTTCtaggaaagcacacacactgttcatatTGGTCTACATCACTGCGCAAGTACAGGTTGCTTTGACTGTGTATAAGCTGGAAGGAAAGGACAATACCAACATGACCCATTTCAGAAAGATCCACCACAATGCAGAGGAGAGCAGACATGGACGAGTTTCTAGCCAACCGACTGTGCCTTTGCACAAGAGAGACACGTCGTCAAGCCATAAGTGCTCCTATATTTAGAGCAGGTGATTTCACATGGTGATGAAGCATGCTCCTGATTAAATTTTTGGTTTACACATTGTTGTGGACAAGGATTCTTAATATagagtttactttttttaagcAATGTAGACAGAAAAAGATCATAACTTGTGTGGTACACAGTAGAGCTTTCATATAgtaacaagatgtttttttgaAACTCCTACATTTCTCTGGATGCCCAAGTCTGGAAATGActagaaattttaaataaagctaaacAAAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299972 lncRNA downstream 91606 11362972 ~ 11364414 (-) True G253384
TU299973 lncRNA downstream 94435 11359515 ~ 11361585 (-) True G253385
TU299971 lncRNA downstream 101803 11353502 ~ 11354217 (-) True G253383
TU299705 lncRNA downstream 190871 11264909 ~ 11265149 (-) True G253174
TU299539 lncRNA downstream 364685 11089077 ~ 11091335 (-) False LOC113530615
TU300067 lncRNA upstream 68173 11530704 ~ 11533297 (-) True G253444
TU300066 lncRNA upstream 69743 11532274 ~ 11533297 (-) False G253444
TU300041 lncRNA upstream 77650 11540181 ~ 11542479 (-) True G253430
TU300042 lncRNA upstream 77650 11540181 ~ 11542479 (-) False G253430
TU300090 lncRNA upstream 108894 11571425 ~ 11571624 (-) True G253463
XM_034311706.1 mRNA downstream 11765 11438049 ~ 11444255 (-) False emp3b
XM_026921110.2 mRNA downstream 12089 11438049 ~ 11443931 (-) False emp3b
XM_034311707.1 mRNA downstream 12090 11438049 ~ 11443930 (-) False emp3b
XM_034311705.1 mRNA downstream 12092 11438049 ~ 11443928 (-) False emp3b
XM_026921109.2 mRNA downstream 13577 11438049 ~ 11442443 (-) True emp3b
XM_026920457.2 mRNA upstream 86863 11549394 ~ 11568603 (-) False avpr2ab
XM_026920456.2 mRNA upstream 86863 11549394 ~ 11568602 (-) True avpr2ab
XM_026921204.2 mRNA upstream 125174 11587705 ~ 11598386 (-) True LOC113530846
XM_034312010.1 mRNA upstream 255298 11717829 ~ 11725337 (-) False LOC113530831
XM_026921182.2 mRNA upstream 255298 11717829 ~ 11725337 (-) False LOC113530831
trnan-guu_24 other downstream 182617 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 196906 11259043 ~ 11259114 (-) True trnae-uuc_4
TU299470 other downstream 440390 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 817302 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 986486 10460694 ~ 10469534 (-) False usp21
TU300077 other upstream 94356 11556887 ~ 11568530 (-) False avpr2ab
XR_003403206.1 other upstream 429817 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 430396 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 678571 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 696241 12158772 ~ 12159360 (-) False ptk6b

Expression Profile