RNA id: TU300045


Basic Information

Item Value
RNA id TU300045
length 4921
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G253433
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11613240 ~ 11620395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACttaaataaatagagaaaaacattttttactaaaagaataaattttatttcagcacTGTAAGTCATTTTCCAACCATACAAACATGACTGCCAACTtcaactctttctctctcagcctTTTGGCTTTCTTCTCAATGCATCATGAATTCAGACCTCAACagcaagacaaataaaaaaggtttcttTCCCAAACAACCTGGTGCTTTCTTTTGACTAAAAATGAGAAACTGTTAATAACGATCATAACcataacagcaataataataataatgaagtttCACCCTTCACTACACAAGTTCTTTTGGAGACCTTGATGCATGCATCAACGCGTGTTTATCCTGGTGAACGGATCAGATGACAGAACGTGTTGCCTACAAATGAGACTGGGTCGTCACTTGAAAATGTTAACAACATTGCAGGGGCAACATGCTCTAAAAACAAGAGGATAAAACAAGGGCACTCATCCAGCAAGAATAGGGGGGAATGGCAGGGAGCCATTGTACACAACACATTGCTGTTATCGCTAACGGGCTCAAAACCTTACAACACCACTCAAAAGCACACAGGTGGTCCTGTGACGTGAAGGGCTTCAAAGCTAGGATAGAAGGGAACAGTTTTAAAGCAAAAATCAAATCTAATCTCCAGACACAAGTCTACAGGAATGCACAGGCAAGGACTCTTCACGCTAACTTGTGACTGATCCTGTTAACAGTTATGTGCATACTTTTAACCTTGCCATGACTACTGATGAAGCTACATTTCCCAAACTGTAACTGTAGAGGGTGCTAGGATTTAACCGCATCAAGACTTGCATCTGAGGCTATGCTTCATAAAAGGGAAAAACTGTTAGCAAAGAAATTGGACAACACACACCTCAGCCACATTTCACCAAAAAGATGTAAATACATTGTTTCCTTCATTTAATATTTGTCAATGGACCCATAATATATGTTATGATCTCAATTACTGAATATTAGAACTCTGATTTccacaaataaaagaaaactgtaaTTTGGGTTGACAAATAGTAAGATAGTATGCACTTTGGTTTTTAGTAGCAGAGATAACTCTCTGTTTTGTGCAAGGATGCAATGGTTAATGTTGAATTTATCAGCTTTTGAATGATCTTCACTGATTAACTGACGCATCTCATAATGTTCGACAAAGTTGTGGTTTAGTCTGATGGCTACAATTTTATCCTAATGGTGAAGTGGTCTGAAACAATAGCAATAAGGTAAAGATACCTATAATCATTACAGTTTCAAATATCTACCTGTGCTAAGTGTATTTAATACTAACTGTAGCAATGGTCAAAGGAGTAATAACgtttttttaaaagtagcaagaaaaaaaaacacaattttcacAATTTCAAACCAAAGATGGttaggttaattttttttttttttttttttttgttcaacgCTGAAAATATCCGTTTCCGACTTCTGGCTACGATTACATACAGACTGATTATAAGCGTAATTATTATTGTCGTTAATATTATCTTTACTGTTAGTATGATGGGGTAAGGAGACAACACTGCAGTAGGAGCAAGAAAGTCCACAACCGAGACATGATAAGTTAAAAGACAAAAGAGTCTAGACATGATGGAACGAGAGAAAGAAGAGGTGATgggcatttgtttttttgttttttgtttttgagaaaaGATAGGGAAGAAATATGGTTGTTATTGTAAAACTACAGAAAGCAAGCATGTGaactgtgagagtgtgtattaaTAACGCTATATTCAACACCAAGACAGGGATTTCTTAAATCAGCAACAAATAGTGCAGTACAGTAACTATCGCCATGTGAATAAATCTGCACATGTTCTAAATTACCACCGAATGAATAGGACTGATTAGGATAAAGGGGGAAAGGCATATGATAAGGTTTGGTTGTACCTCAAAAATCAAAACACAGATcccttaaaatatttaatactgtaaattATCTTACATCTGCATCTATGTTGGGTATAGTTAACTCTCAACAAATGTCTGATTAAAATGGCAAATAAGAAAGAGGTTAgaacagtgaaaaaaagaatacataaaAGCCAGATAAGAAGCTCTGCAGAGGGTAACTTGGGAACCACACATCTGAAATCACTAATTAAGCATTACAAGTAATCAACTATatcaaatacaaaaagaaatccTAAATAACGTTACATTTTCTCTTGTACTAACTGGTGTCTCTCTAAAAGAAAACATCTACATatgcacatatgtgtgtgtacttgtttATGTCTATTTCTGGGTGTATCTGAATTATGGGTGTGTTAATATCTTTGAGACTAAGATTATGCTAAATGTAACTCTGATAACTGGTATTCTATGACAATAATCTGTGCCTGCATAGTGAACTTACATTTTGTATCTACCTTAAATggaaactgaaaactgaataaCGGTCTACAGTATGTCTGAAGCAATTGCTTGTTTATAGGTACAAAcaagtgtatttgtgtgtatgtgtgtttttggcgTGCTTAATTCATAATGGAAGATCCTTCCATTACGAGCACTGCTGAaatgtcatcatcatcaaatgCAACAACCAAAGTCTGAACTTCAGAATAATTGGCTGTGTATGTATAGTACGGTATCGTATGGGTTTAAATACACTACTTGCAATGCTATGGTCTCGATTAATACCGATTTATCATAGTTCATGTATGTCCAAGACGATCACATCATGTCTTTACCTTTATGAACTTGGACGTAGCCAATGACAAACGCTTGTGTAAAAGGTTACTGCTGACTAtttgtgtatatctgtgtggtATACATATATAAACTTAAACAAGTTAAACTAATGGAGGGGATTCCGCAAAACTTTTAGAATatacaaacataaatatgtCTGTCGTTCTGCGATATTTAGAGCTTTTCATATACAATTTGTGGCACATGATAAACTATCATCTATCcatactgtaacaaaataaggTGCATCTTATTAACATGCCTGCACAGACACTAATGAAATTCAGTATTAAAgttttctaattaaaatcatttgtcAAAAGAGCCTCTCTCTAGTGTATTTGTTCTTTGATACAAATTGAAGCTCATTCCCAACATCCCCATAATTACTAGTACAAAAAAAGTTCACAAAGGAGCATTTCCTTTGCGTGAAGGTGTCAAATTGTGTTTCAAAGCTGGAGGATTTTCATGTTAGATGGATTACTTTAAACCCATTTTCCCTCAATAAAATGCTCTCTGAAAAGTGCACAAGGTCCATGGGCAGTCATAGAAACAACACATATGGGTTTAATATCACAAAAACAGAACACCatatattaatgtaatgaaatgactAGAGAGCGTGGTTTTTCACCCAACTGTGTCACAAATTTAGGAGTTCCACTTCTTTACCCCAGTTTCTTGGTCTACGTAGACTAATGACTGTAGTTGTACTGTTctataattatacataaataacataAGTGCTTTATGTTGAGTTACAAAAAATTTCAGAGGGCGTTTCCATTTCGGTTTGGTGCTGGGGCTTGCATATCAATATCTATATCTCGGGGTATAAGGTGCtttaaaaaactaataaaaaactTATAACCCTATTAGCAGCTATGTCAGTGGGTATCACAAGTGCTGTATGTCTATTTACTGAGTAGATGATGTGggacaaacatttttatttatttaaaaaaaaactactgagaGTGGAGATAGCAAAGCAATACCATCCCTGACTGGCATGTCAGCAGTCTCACGCCTTTGTTCTTTACCTCTCAGCATTGTGATAAGCAGAATCTGGATCACTGAAATTAGTAATCTAACACAAGTAATTTCAGCATTGTGACACAACCCATTTTTCTGCAACAAAATCAGGATTTTTTGGACCCTTATTATATGCCGCAAAACCACTTAATTtcaaactgtaatgttacaaaaacacaaaatacaacaaTATCATTCCCCTTAAAGGGATGACTCAAACAAACAGTGCTATTGactaataatgattaaaaactgATGCTATTCTCACGGTCAAGCAGCTTTAAATTCACTGGTAGCCATATCACTATTTGTGAGGACAATCCCTTTGACACTAACCTACGACAGCACTGGAGTGTCTCACTTTATGCAGTGCTCAATCAGGGACAATTTATTAACTCTAAACAGGGTCCTAATTCAATCTTTGCCTTGCCTGCAATACAAGTAGCAACAGGGCTTTTGTTTAAGTACTATGAATTCATTTATaagaatataatttaaaaaagaaacgtGCAGGTTTTGACAACTACTGCGATCCAATTACCGACAACTACAACAATGTTTGCCGAGAATCACTAAATATGAgttaaaatgggaaaaaaaaaaaaaaataaaaaaaattccttctgAAATCACCTGACTATACGGAAAGAAGGTGTGAATAAATTGTTCaattaaacaagaaattaaacaAGAACTCTATAAGCACAAGGCAATACAGCCAATGTAATGTGGGCTTTGGCCAACATTCTAAAGCCATCTTTAAAGAAACAATCCAGCATTTTCTAACCTAATCTCCAACTACTGCATCTGTAATGTATGTGCAAATACCATAGACAAgaatttccctgtactgaggaaataaacagaaactgTTTACTTGAAAGAACAGAATTCATGCTTTGGGAGATTATTTTTTCAGAGTAGAGAACTTGCAGTTAAGCGCATTTAAGAGCATTCATCATAGCTTAACATAAACAATGAAGCCTTATTGAGACCGGATACGACTTAAGAAAAGCCAACTAACCACATATGTTCATAGTcaaatatttcacacattttatacattctTGGCAAAATTCAACAaccacactaacactcactcataagttttgagtaaacaggttttctgttgtTCTCTCAGCTCAGGGAAACATGTAGAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300091 lncRNA downstream 41221 11571820 ~ 11572019 (-) True G253464
TU300090 lncRNA downstream 41616 11571425 ~ 11571624 (-) True G253463
TU300041 lncRNA downstream 70761 11540181 ~ 11542479 (-) True G253430
TU300042 lncRNA downstream 70761 11540181 ~ 11542479 (-) False G253430
TU300067 lncRNA downstream 79943 11530704 ~ 11533297 (-) True G253444
TU300125 lncRNA upstream 92602 11712997 ~ 11714176 (-) False G253494
TU300126 lncRNA upstream 92602 11712997 ~ 11713787 (-) False G253494
TU300122 lncRNA upstream 92782 11713177 ~ 11714753 (-) True G253494
TU300131 lncRNA upstream 123555 11743950 ~ 11744158 (-) True G253499
TU300120 lncRNA upstream 134810 11755205 ~ 11757930 (-) True G253492
XM_026921204.2 mRNA downstream 14854 11587705 ~ 11598386 (-) True LOC113530846
XM_026920457.2 mRNA downstream 44637 11549394 ~ 11568603 (-) False avpr2ab
XM_026920456.2 mRNA downstream 44638 11549394 ~ 11568602 (-) True avpr2ab
XM_026921110.2 mRNA downstream 169309 11438049 ~ 11443931 (-) False emp3b
XM_034312010.1 mRNA upstream 97434 11717829 ~ 11725337 (-) False LOC113530831
XM_026921182.2 mRNA upstream 97434 11717829 ~ 11725337 (-) False LOC113530831
XM_026921183.2 mRNA upstream 97434 11717829 ~ 11725337 (-) True LOC113530831
XM_026920993.2 mRNA upstream 108606 11729001 ~ 11741759 (-) False uba3
XM_026920994.2 mRNA upstream 108606 11729001 ~ 11741728 (-) False uba3
TU300077 other downstream 44710 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 150534 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 150534 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 339837 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 354126 11259043 ~ 11259114 (-) True trnae-uuc_4
XR_003403206.1 other upstream 271953 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 272532 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 520707 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 538377 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2508821 14129216 ~ 14150581 (-) False LOC113530423

Expression Profile