RNA id: TU300066



Basic Information


Item Value
RNA id TU300066
length 681
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G253444
representative False

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11530704 ~ 11533297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTAGCTTTAACTTTCTGGTCGTgtgttggcaaaaaaaaaaaatctgacactgttacaaatgtttatttttattcaatgaATTTCATTGACAAGCAGACATTCCAAAAGCCAGAATGTGTCCTCTGTACATCAAGTCCACATCTAATAACACAGGTTATTACTCAGGCTTCTCCCAACTGCATCATAAAACAATCTCCTGGCTGGAACAAATTACTTACAAAACTGAGACATGAGCACTTGCTGGTACAAGAAATACATGTTTACATGACCGAGTTGCTTTTTCACACTTTTAGCACTTGACATATTTATGCCTGAATTGAACTTTTAGTGCTGTATGCCAGATAGTACAGAACAATGCCGATGACAGCTGCTAAGACCTCCGAGGACACCCAAGGACCACTCCATGCACCCCTGTGCTCTACATTGACAGAAAACAGAGGCTTGATGGCTTCTACATCTTCATTATTTCTCTGGGCCTTACGCAGGACGCTGTACGCCTCCTCATCAAAGAACTTCACTTGATAAGTGCCTGAGCTGGCTTGTTTGTGGGGAACACTCCAGGAAACCTGATTTTCCAACATCCTGACCTCTGGTCACAGGAAACTGTTTGCCATTAACATCTGCGTACAGGGCAACACTCtagtagagagagacagacacagagagatagagagagacaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_003403134.2 lncRNA downstream 69743 11456020 ~ 11462531 (-) False LOC113530309
XR_003403133.2 lncRNA downstream 69743 11456020 ~ 11462531 (-) False LOC113530309
TU299972 lncRNA downstream 167860 11362972 ~ 11364414 (-) True G253384
TU299973 lncRNA downstream 170689 11359515 ~ 11361585 (-) True G253385
TU299971 lncRNA downstream 178057 11353502 ~ 11354217 (-) True G253383
TU300041 lncRNA upstream 6884 11540181 ~ 11542479 (-) True G253430
TU300042 lncRNA upstream 6884 11540181 ~ 11542479 (-) False G253430
TU300090 lncRNA upstream 38128 11571425 ~ 11571624 (-) True G253463
TU300091 lncRNA upstream 38523 11571820 ~ 11572019 (-) True G253464
TU300045 lncRNA upstream 79943 11613240 ~ 11620395 (-) True G253433
XM_034311706.1 mRNA downstream 88019 11438049 ~ 11444255 (-) False emp3b
XM_026921110.2 mRNA downstream 88343 11438049 ~ 11443931 (-) False emp3b
XM_034311707.1 mRNA downstream 88344 11438049 ~ 11443930 (-) False emp3b
XM_034311705.1 mRNA downstream 88346 11438049 ~ 11443928 (-) False emp3b
XM_026921109.2 mRNA downstream 89831 11438049 ~ 11442443 (-) True emp3b
XM_026920457.2 mRNA upstream 16097 11549394 ~ 11568603 (-) False avpr2ab
XM_026920456.2 mRNA upstream 16097 11549394 ~ 11568602 (-) True avpr2ab
XM_026921204.2 mRNA upstream 54408 11587705 ~ 11598386 (-) True LOC113530846
XM_034312010.1 mRNA upstream 184532 11717829 ~ 11725337 (-) False LOC113530831
XM_026921182.2 mRNA upstream 184532 11717829 ~ 11725337 (-) False LOC113530831
TU299993 other downstream 69568 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 69568 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 258871 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 273160 11259043 ~ 11259114 (-) True trnae-uuc_4
TU299470 other downstream 516644 11013964 ~ 11015630 (-) False LOC113530950
TU300077 other upstream 23590 11556887 ~ 11568530 (-) False avpr2ab
XR_003403206.1 other upstream 359051 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 359630 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 607805 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 625475 12158772 ~ 12159360 (-) False ptk6b

Expression Profile