Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU300144 |
| length | 279 |
| lncRNA type | read_through |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC113530816 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11838796 ~ 11859346 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU300151 | lncRNA | downstream | 63108 | 11777718 ~ 11777933 (-) | True | G253509 |
| TU300120 | lncRNA | downstream | 83111 | 11755205 ~ 11757930 (-) | True | G253492 |
| TU300131 | lncRNA | downstream | 96883 | 11743950 ~ 11744158 (-) | True | G253499 |
| TU300122 | lncRNA | downstream | 126288 | 11713177 ~ 11714753 (-) | True | G253494 |
| TU300125 | lncRNA | downstream | 126865 | 11712997 ~ 11714176 (-) | False | G253494 |
| TU300190 | lncRNA | upstream | 44931 | 11904277 ~ 11904686 (-) | True | G253538 |
| XR_003403159.2 | lncRNA | upstream | 284287 | 12143633 ~ 12150945 (-) | True | LOC113530483 |
| TU300415 | lncRNA | upstream | 284368 | 12143714 ~ 12150861 (-) | False | LOC113530483 |
| TU300430 | lncRNA | upstream | 358078 | 12217424 ~ 12217744 (-) | True | G253749 |
| TU300547 | lncRNA | upstream | 533017 | 12392363 ~ 12393653 (-) | True | G253843 |
| XM_026921159.2 | mRNA | downstream | 6846 | 11829275 ~ 11834195 (-) | True | LOC113530817 |
| XM_026921155.2 | mRNA | downstream | 6878 | 11821848 ~ 11834163 (-) | False | LOC113530815 |
| XM_026921154.2 | mRNA | downstream | 15067 | 11821848 ~ 11825974 (-) | True | LOC113530815 |
| XM_026920993.2 | mRNA | downstream | 99282 | 11729001 ~ 11741759 (-) | False | uba3 |
| XM_026920994.2 | mRNA | downstream | 99313 | 11729001 ~ 11741728 (-) | False | uba3 |
| XM_026921151.2 | mRNA | upstream | 3805 | 11863151 ~ 11884023 (-) | False | nfascb |
| XM_026921148.2 | mRNA | upstream | 3805 | 11863151 ~ 11884023 (-) | False | nfascb |
| XM_026921150.2 | mRNA | upstream | 3805 | 11863151 ~ 11881860 (-) | False | nfascb |
| XM_026921149.2 | mRNA | upstream | 3805 | 11863151 ~ 11881860 (-) | True | nfascb |
| XM_034311549.1 | mRNA | upstream | 3805 | 11863151 ~ 11878850 (-) | False | nfascb |
| TU300077 | other | downstream | 272511 | 11556887 ~ 11568530 (-) | False | avpr2ab |
| TU299993 | other | downstream | 378335 | 11456021 ~ 11462706 (-) | False | LOC113530309 |
| TU299994 | other | downstream | 378335 | 11456021 ~ 11462706 (-) | True | LOC113530309 |
| trnan-guu_24 | other | downstream | 567638 | 11273330 ~ 11273403 (-) | True | trnan-guu_24 |
| trnae-uuc_4 | other | downstream | 581927 | 11259043 ~ 11259114 (-) | True | trnae-uuc_4 |
| XR_003403206.1 | other | upstream | 33002 | 11892348 ~ 11892420 (-) | True | LOC113530992 |
| XR_003403207.1 | other | upstream | 33581 | 11892927 ~ 11893002 (-) | True | LOC113530993 |
| trnae-cuc_33 | other | upstream | 281756 | 12141102 ~ 12141173 (-) | True | trnae-cuc_33 |
| TU300417 | other | upstream | 299426 | 12158772 ~ 12159360 (-) | False | ptk6b |
| XR_004579685.1 | other | upstream | 2269870 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
