RNA id: XM_026921157.2


Basic Information

Item Value
RNA id XM_026921157.2
length 2976
RNA type mRNA
GC content 0.39
exon number 11
gene id LOC113530816
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11838796 ~ 11859346 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGAAAGGTAGCCAGTGCAAAACTGCATCCACAATGACAAGACTTATTCTACTCACagGCATTTGCCTGTTATTTATTCAACTTGtttcAGCTTATCAGCTTATATGCTACTTCACCAACTGGGCCCAGTACAGACCTGATCCTGTGAAGCATTTGCCTGCCAACATTGATCCTTTCCTGTGCACACATCTGATCTACGCGTTCTCCATCATTGACTCTGCAAATCATCTGGCTACCTACAAGTGGAACGATGAGACTCTCTACCAATCGTTCAATAGTCTGAAGCAAAGTAATCCAAGCTTGAAGACACTTTTGGCTGTTGGAGGATGGAATTTTGGTTCAACtcaATTCTCCACCATGGTGTCCACACAAGCCAACAGAAATACATTCATCCATTCCTCCATCAGCTTTCTCAGAAAGTATGGATTTGATGGCCTGGATCTAGACTGGGAGTATCCTGGAGCAAGCGGCAGTCCTCCAGAGGACAAGCAAAGGTTTACTCTGCTCTGTCAGGAGCTTCGACAAGCCTATGAGGCTGAAAGCAGTGCTACAGGACATCCCCGGCTTATGGTCACAGCTGCAGTGGCTGCTGTGAAATCAACTATAGATGCTGGATATGAAATTGCTGAGATTTCCAAgTACCTGGACTTCATTAGTGTGACAACCTATGACATTCATGGGTCTTGGGAAAGTTTCACTGGACACAACAGTCCTCTGTATCAATGGTCTCAGGAAACAGGAGCTCAAATCTACCTTAATACTAATTACTCAATGACATACTGGAAGAATCAGGGTGCTCCAGTGGAGAAGCTGAGGATGGGTTTTGCTACATATGGCAGAACGTTCCAACTGTCGTCTACAGCGAGTGGCCTGGGAGCTCCATCAAGTGGCCCTGCTTCTGCTGGCACCTACACCGGAGAGCCAGGCTTCTGGTCTTATTATGAGGTCTGCAGCTTCCTTCAAGGAACCAGCGTACAGTGGATCCAGGATCAGAAAGTACCCTATGCCACAAAAGGGGGCCAGTGGGTTGGCTTTGACACCAAGGAGAGTTTTGACACAAAGgtGACCTACCTCAAAGATAATAATTTTGGAGGGGCCATTGTGTGGGCTCTTGATTTGGATGATTTTACTGGACAGTTCTGTGGACTGGGAAAATACCCTCTCATCAACGAGCTCAAGAAACTGCTAAGCAATGgcaataaaattaattacagtatattatcacTTCTAATACTGTTAATTATAATATGAATTCTCCTGAGTTTACAACCTCATCTGCTCCTCCTATGACTCCTCCTGTTGCAGTTCTTATTACACATCCTGCTGaagctcctcctgctcctcttcctgCTACAGTTTCACAGTGGTATTGTGCAGCCAAGAAAGATGGTATCTATACAAATCCTTTTGATAATAAATCTTTCATCCATTGTGCTGCTGgcagaaaatgtgtaaaaccCTGCCCTGCTGGCACTACCTACAATGAGAGCTGCCAGTGCTGCAGCTTGCAATAAAACTGCCACAAGATGTTAGTGAACACATGATGTAGACatgatttaaaatacattagcaACAGATTAGCAAAATATCTGAACAGTTGTCTGAACATGGCTTCATTGGCTTGATActtacaaatattatatttctctatctttaaaaatattgcatagATAATTTATCTATCTAAGTGCTAACTTTATTATCATTGATCTTTACTAACAGGATTTAATTATGATtggtattttttcatttttaattttatatagtATGGGCTCTAAAAACATTATATACTAGACACTCCCACAATTTAAATGCTCTTTTTTCTGTCAGCTGTATTTTTCCAGATTTAGCAATATGCatggtaaataaacataataaaccaCACTTTTATTTCTATGATCAAACCCAAAGGCTTACACTATTTATTAATTCAGCTTGAAGTATAAGTTCATATACCACCAAATTCATAAActgcttctttaaaaaaacactcatcCAGTTATAGCTGGAGAGCTAAGGAGTTGGAGGTGTTGGAGAAGAATCAGATATGACTGAATCTGAAGCTGGATCTGTGGCACACATAAGCACATGGAGGAGTTGCTAGTTTCCCTAATTCATAGCAGTGCAAGGCCAAACAATCTCCAAAAATCTTTGAGCATTTTACTTAATAGCTTTGATTCTTCAAAAGTTCAGGTTAATGGAATGACACTTCATGTGACAAGGCACATCAACAGCATGCCAAATAATCTCTATATAGTGTCACATTctgaaatgttgaaatgtttctttctctccttcattaaaatatcaaaagcGTAGTGGCAGAATACTGTCACAATATGTATAAAGTTGTGTTAAAGCACAAAATGCATGGATTCAAGCTGTGAATTCAGACATCATCCTGCATAGTATGTTCATCAACATAGTTTATTTGCAAATACACAGCAACTATTTGCCCCTGTGTTTGAAGTCATAATcagtcacattttttaaaaatggggaTAATAAAGAAATTTCACATTATATCATATAAGCTGGAATTGGTATGTCAGCACAATGATCATCAATATTAGCAGAGCTCTTGTTATTTCTAGTATCATCATCTCTATCAATACTGATTACCTCATCTAAAAATTGTTAGTAATGTCTGAAGACTAAATTAAGGACAATTCCAACTTCATCTCATTTGCATTAGCACTGTATGATTTTAGTATGAGTTCATACAAGTCAGTCCCCACTACAGTTACTATAACATACAATTTGAATGGGACTCATGTACATCACATTGCTGGAAAGCCACCTTTTTGTCAAAATATGTATAGCAGGCTAAATACCAGATAAAGTAAAGAGACAAGGTTCAGTTCTCATGATTCTTTGGGAACTGTAATCTACCTATGAAGTTTCATAAACcaaacacactcctgtacaaTCCACATAGAATGTAAGATGTAATAGATGTAAGggaataaaattac

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300151 lncRNA downstream 60863 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 80866 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 94638 11743950 ~ 11744158 (-) True G253499
TU300122 lncRNA downstream 124043 11713177 ~ 11714753 (-) True G253494
TU300126 lncRNA downstream 125009 11712997 ~ 11713787 (-) False G253494
TU300190 lncRNA upstream 53816 11904277 ~ 11904686 (-) True G253538
XR_003403159.2 lncRNA upstream 293172 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 293253 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 366963 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 541902 12392363 ~ 12393653 (-) True G253843
XM_026921159.2 mRNA downstream 4601 11829275 ~ 11834195 (-) True LOC113530817
XM_026921155.2 mRNA downstream 4633 11821848 ~ 11834163 (-) False LOC113530815
XM_026921154.2 mRNA downstream 12822 11821848 ~ 11825974 (-) True LOC113530815
XM_026920993.2 mRNA downstream 97037 11729001 ~ 11741759 (-) False uba3
XM_026920994.2 mRNA downstream 97068 11729001 ~ 11741728 (-) False uba3
XM_026921151.2 mRNA upstream 12690 11863151 ~ 11884023 (-) False nfascb
XM_026921148.2 mRNA upstream 12690 11863151 ~ 11884023 (-) False nfascb
XM_026921150.2 mRNA upstream 12690 11863151 ~ 11881860 (-) False nfascb
XM_026921149.2 mRNA upstream 12690 11863151 ~ 11881860 (-) True nfascb
XM_034311549.1 mRNA upstream 12690 11863151 ~ 11878850 (-) False nfascb
TU300077 other downstream 270266 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 376090 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 376090 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 565393 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 579682 11259043 ~ 11259114 (-) True trnae-uuc_4
XR_003403206.1 other upstream 41887 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 42466 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 290641 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 308311 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2278755 14129216 ~ 14150581 (-) False LOC113530423

Expression Profile