Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU300190 |
| length | 266 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G253538 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11904277 ~ 11904686 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04974 | Protein digestion and absorption |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU300144 | lncRNA | downstream | 44931 | 11841041 ~ 11859346 (-) | False | LOC113530816 |
| TU300151 | lncRNA | downstream | 126344 | 11777718 ~ 11777933 (-) | True | G253509 |
| TU300120 | lncRNA | downstream | 146347 | 11755205 ~ 11757930 (-) | True | G253492 |
| TU300131 | lncRNA | downstream | 160119 | 11743950 ~ 11744158 (-) | True | G253499 |
| TU300122 | lncRNA | downstream | 189524 | 11713177 ~ 11714753 (-) | True | G253494 |
| XR_003403159.2 | lncRNA | upstream | 238947 | 12143633 ~ 12150945 (-) | True | LOC113530483 |
| TU300415 | lncRNA | upstream | 239028 | 12143714 ~ 12150861 (-) | False | LOC113530483 |
| TU300430 | lncRNA | upstream | 312738 | 12217424 ~ 12217744 (-) | True | G253749 |
| TU300547 | lncRNA | upstream | 487677 | 12392363 ~ 12393653 (-) | True | G253843 |
| XR_003403193.2 | lncRNA | upstream | 701855 | 12606541 ~ 12607682 (-) | True | LOC113530910 |
| XM_034312069.1 | mRNA | downstream | 3815 | 11894478 ~ 11900462 (-) | False | naca |
| XM_026920873.2 | mRNA | downstream | 3885 | 11892151 ~ 11900392 (-) | False | naca |
| XM_034312070.1 | mRNA | downstream | 3919 | 11894478 ~ 11900358 (-) | True | naca |
| XM_026920874.2 | mRNA | downstream | 4010 | 11892151 ~ 11900267 (-) | False | naca |
| XM_034312068.1 | mRNA | downstream | 12251 | 11884544 ~ 11892026 (-) | False | LOC113530663 |
| XM_026920875.2 | mRNA | upstream | 3240 | 11907926 ~ 11915984 (-) | True | prim1 |
| XM_026920289.2 | mRNA | upstream | 22220 | 11926906 ~ 11932495 (-) | True | rnd1a |
| XM_026920758.2 | mRNA | upstream | 163903 | 12068589 ~ 12083533 (-) | True | slc17a9b |
| XM_026920760.2 | mRNA | upstream | 179299 | 12083985 ~ 12087721 (-) | True | gid8b |
| XM_026920538.2 | mRNA | upstream | 251042 | 12155728 ~ 12167795 (-) | False | ptk6b |
| XR_003403207.1 | other | downstream | 11275 | 11892927 ~ 11893002 (-) | True | LOC113530993 |
| XR_003403206.1 | other | downstream | 11857 | 11892348 ~ 11892420 (-) | True | LOC113530992 |
| TU300077 | other | downstream | 335747 | 11556887 ~ 11568530 (-) | False | avpr2ab |
| TU299993 | other | downstream | 441571 | 11456021 ~ 11462706 (-) | False | LOC113530309 |
| TU299994 | other | downstream | 441571 | 11456021 ~ 11462706 (-) | True | LOC113530309 |
| trnae-cuc_33 | other | upstream | 236416 | 12141102 ~ 12141173 (-) | True | trnae-cuc_33 |
| TU300417 | other | upstream | 254086 | 12158772 ~ 12159360 (-) | False | ptk6b |
| XR_004579685.1 | other | upstream | 2224530 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
| XR_004579686.1 | other | upstream | 2224530 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
| XR_004579684.1 | other | upstream | 2224530 | 14129216 ~ 14150581 (-) | True | LOC113530423 |
