RNA id: TU300200


Basic Information

Item Value
RNA id TU300200
length 2104
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G253548
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11939079 ~ 11941237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtggtcAATATAGGCACATTAGTTATAAAATTGTCATAGAGTTCACATAAAGTAACAATCCAGTTCCAATAGAAATACAGTCTTTACACCGATCTTTCAGTTTCCTCCATGAAGCAGAAGTAGGCCAAATTAATACTATGCtaaaactatattatatatctatatttattcatatggACCTAGCTGAATAAACAGCTCAGTGGTGTACCAAACCCGCGCTTCTACACATTATAGTCCAGGCATACAACCAGGAAGCACAAAACAAGGACAAAAcagattaatacatttatttggaTTTGTTAGTCAGTGACAGAATCAAACCATAACACATGTATCGATATATCGTTTTGCACGATACTTAGCAGTTCTCctgatttaaaattaaataaccaGGTCTAAAATATGttctctatactctatactctgtactctatacaatacaaatatcacattatttacacacaagcacaacaaCAGTAAAAACGCGATGACAGTGTTAACCTGTGGGGATAATTACTATTGcgatattaattcattttaagagTATTTAAAGAGTAAGGAAATGACACATTGCACATATGCTATGTATAATGCTTTCCCATAGGATTACCTGAACTTCTTGGTATGGAATGATTTGGTTTCCTATATATCTCCAGATTTCCAGATCCTAGTGATTttcatgtacatatatatatctcctAGATCCTAGTATATATCCTAgatccttatatatatatatataaaacactagatagatagatagatagatagatagatagatagatagatagattagatAGATATAACATTTAGCCATTTGGTGCGTTATAAAAATATTCCTatgataaaatatcaaatataaaatatacctatgaaatatttctatatgAAGCCGAGTAACTTCTTCCACTGTATTTAGCCTATTGTTTGCCTCTAACATGTTTTGTCTTTGTCACTTCACCACCTGGAGCAGCATTTGGCTGGAACATGCTGTTCCTCAGCAAAGATGTTAGGAACAGACTGTGCCATGTAGGACAAGCAGAAGCCTTAAAGGGAGACAGGCATAAACAACAAATGCGGCAATTTATACTGAATGATCTGCTCCTGCCTCattaaaagtacaaaacaaCGAGCAGATTGTTTTTTCTAGGATCTCCTGGTCAGAAATGCCACTGCGCAACCTGATAACGTTAACTGTAATTACATTCCCATAGACATGGTCTGCTTTTACAATTCACGCTTCATTAATGCACAGTTTCCTAAGCTCTGAATTCAGGACCAGCTTGGCATATAGCTCTATATGAACTGTTACACAAGCAGTGTTTTAGAGTAGCTAAAACAAAAGCCCATTAACTCGTTGATTGCTGTGAGGTAAGTTACTAGATGGCGTGTTTGTAAACAGGACTGTAACTGATGGACTCTATAGGTGGCGCACTCACACAGAACAAGCTCAAACTTGTCACATTGCAACATATGCTAATGTCATTTGATTGCGCCATGAGTAGCCTGTGCTATCGACTCCAACCTATTTCCCCACATATAATCACTCTACATTCTTCTGAACGAAGACATACGGGGATGCATTTACTAGTCCACAAGTAGCTAGGCCTGCTGACGCAAACGCATGTGTCTGTTATGTGCGAAAACTAGCTAGAGATTAATTCTCACAGTAGGCTTGCACCTGGCTTGCGTTACACCCCATGATCTATTGTCTTCATTTTACACTCTCAGCTAGTTATGTGGATACATCAACTATATCTGCAAAGTGCACATTTAGTCATTCTTGCTAGACCTTAACTGCACAAGGGAGAAGACCTGGGCCTGCACTTCAAGATTGCGCAAAATGAGCAAATAATAACGCTAAAGGCCTGGGATCCTGTTCCTTGTGAAGGTGCAAGGAAAAGAACCCGTACTACAGCCATTCTTTCGATCTGTTACTGAACGCCTCGCAGTAATGAAGCTGATATCCTGCTACTGAACATGAGTAGGCGCGCTGAATAGCTGATGACTGTCACATTGCGCATTAAGCATGCACACTCGCGCTGAAGAGGACAGAACGGAGGAAACACGACGCTCAGGAGATTCCTCTCTTGGCATTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299948 lncRNA upstream 38715 11892150 ~ 11900364 (+) True G253367
TU299949 lncRNA upstream 38715 11892150 ~ 11900364 (+) False G253367
TU299946 lncRNA upstream 42942 11892150 ~ 11896137 (+) False G253367
TU299950 lncRNA upstream 42942 11892150 ~ 11896137 (+) False G253367
XR_004579731.1 lncRNA upstream 139775 11797257 ~ 11799304 (+) True LOC117599271
XR_004579667.1 lncRNA downstream 5095 11946332 ~ 11974544 (+) True LOC117599216
XR_004579668.1 lncRNA downstream 50403 11991640 ~ 11992121 (+) True LOC113530280
TU300249 lncRNA downstream 72042 12013279 ~ 12013495 (+) True G253593
TU300257 lncRNA downstream 141806 12083043 ~ 12083656 (+) True G253599
TU300495 lncRNA downstream 424823 12366060 ~ 12366461 (+) True G253798
XM_026920869.2 mRNA upstream 31161 11900398 ~ 11907918 (+) True tfip11
XM_034311550.1 mRNA upstream 117319 11808991 ~ 11821760 (+) False pm20d1.2
XM_034311551.1 mRNA upstream 117319 11808992 ~ 11821760 (+) False pm20d1.2
XM_026921152.2 mRNA upstream 117319 11808993 ~ 11821760 (+) True pm20d1.2
XM_034312005.1 mRNA upstream 130377 11785870 ~ 11808702 (+) True lemd1
XM_026921106.2 mRNA downstream 80419 12021656 ~ 12023438 (+) True bhlhe23
XM_026921197.2 mRNA downstream 148310 12089547 ~ 12112153 (+) True dnajc5ab
XM_026920441.2 mRNA downstream 172385 12113622 ~ 12121372 (+) False trim101
XM_026920438.2 mRNA downstream 172385 12113622 ~ 12118875 (+) False trim101
XM_026920439.2 mRNA downstream 172385 12113622 ~ 12118875 (+) False trim101
TU299947 other upstream 38715 11892150 ~ 11900364 (+) False G253367
XR_003403199.2 other upstream 523630 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 523630 11400036 ~ 11415449 (+) False wu:fa11c10
trnaf-gaa_28 other upstream 671396 11267611 ~ 11267683 (+) True trnaf-gaa_28
trnah-gug_14 other upstream 679161 11259847 ~ 11259918 (+) True trnah-gug_14
XR_003403157.2 other downstream 172385 12113622 ~ 12121372 (+) True trim101
TU300294 other downstream 200250 12141487 ~ 12143527 (+) False ppdpfb
XR_004579730.1 other downstream 425506 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 895814 12837051 ~ 12850995 (+) False rbbp8l
XR_004579688.1 other downstream 2128991 14070228 ~ 14072158 (+) False wfdc2

Expression Profile