RNA id: XR_003403159.2


Basic Information

Item Value
RNA id XR_003403159.2
length 1663
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC113530483
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12143633 ~ 12150945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGGGGTGTCTGGCATCTGGAGGATTCCTGAGTGGAAGGGGTCTATATAAAGATCCTGGTGGCTTGTTATGTTGGTAGATTTCCCTGCAGCAGCATCTGTGCTTCATAACATGCAGGAAGAAGTTAACTTACTCAACAAGGATTGCTGACTCCAAGGATTTTAAAAGGTTGCATGCAATAAAGGTTCCAGAAGGGGGTTTTGGACTTTCCAAATATTGTACACCTATACTGAGACCATGAGCAGTGTGAACTCTGCTGCTTGTCTGCTGGCAAAGAATCACTTTTACCAGAATATCAGTCCTACCAACAAAATACAGCCTGTGTACAGTTTCCCTGGAAGTCTGTCACAAGCAAGACAAAGGCAAGTGACTGTCTGGAAAACTGCCTCCTTGCATCAAGGTTTGCCAGGACAGGAGCCCAGACCATGGGTATTAAGTTTGGTTTGGAAACGTCCATTATCCAACCCGGCCTCATCCAAAAGGCTAGGTTCTGCTGACCGTGTGATCAAATAGACATCTGAACTACACCTTGTCAAAAGACACGTAACATTCCCTGAGCCACAGCATATTCTTTCCCTTTTGAAACTCCTAACCCACTAGAGATTGGGTTTAAAGACTTGATCCAGCTGATCTAGACCCCATGAATAGTTTCCTAGCAGTTCTACctgtaaatattaaactatTTCATTTGTCCAGGAAGATTCAAGAAAGAAAGGACCTGCAGTTGTTTTGTGGCATGATGCATTCCCCTAATTGCTTCTCATTTTTCCCCAAAGAGCGAAAGAGCATCTCTTGTGTTCTCCTTAACCCTTACTGTAGGGAGTGTGTGTCCTCATTCCACAGCGCCCAATCAGAGCTTTACCTGGTCTCCCCAGCACAGACTTGTTGCCAAGCACAGGGGAAGAGAGACTGAATGAAAAGGATAGTGTCAGCGCACTAGACAAAGCCTTTTCCATGAACACAACCATCAGGGCTCAGTGACCCGAAAATATGCAAACACATGAGGGGAAAAAGCATGCACTTTATGAGAGCCGTGTTCAAAAtctttaaatggataaatggtGAGGTCAGGTTCTATTTTCTCAAGCACATTAGATCAGCACATTCTGTCATGCAAATCTTTTATAAAAGCAGAGtcttctttttgtatttttctgctcaaatgtgaaatgaaaagcTCAGTCCTTTTCCCATCTTAATTATATCACACAGTCTGGATCAGCATTAGTGGGCTTCCCTCTCACTCAAATGAATGTCTCTAGACTTGTTTACTTTTCCAAAAGCTTCATGCTGTTTTTCCAAAGTGTGCAATGTGATTCAAAAGGAAGTTTGCACAACGGAATGTACACAGAAGACCCACTCAACCTGAATTAACATGCCAGTTACACAACAGCTCCAGATCAGCTCTAAAAGCATGGCAGGAATAAGGGATGGCTGTATCCTTTTTCCTTAGATACTCTGAATAAACACATTGATAGAGGTCATTACTCTGGAATAAGATGTGAAAAGCTGTGTTAACAAGCCAAAAATAGGCTTACACTGAAGGAATAAACCAGCAATGAAAATGACGCAAAGTATTCCTACATTATTGCACATGTACAGTGGAAAGCAGTATTTGAGGAACTTGCTGAGTGTAAGTAACCATTAAAAGGATTTGCTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300190 lncRNA downstream 238947 11904277 ~ 11904686 (-) True G253538
TU300144 lncRNA downstream 284287 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 365700 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 385703 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 399475 11743950 ~ 11744158 (-) True G253499
TU300430 lncRNA upstream 66479 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 241418 12392363 ~ 12393653 (-) True G253843
XR_003403193.2 lncRNA upstream 455596 12606541 ~ 12607682 (-) True LOC113530910
TU300710 lncRNA upstream 510299 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 541400 12692345 ~ 12714075 (-) True LOC117599211
XM_026920760.2 mRNA downstream 55912 12083985 ~ 12087721 (-) True gid8b
XM_026920758.2 mRNA downstream 60100 12068589 ~ 12083533 (-) True slc17a9b
XM_026920289.2 mRNA downstream 211138 11926906 ~ 11932495 (-) True rnd1a
XM_026920875.2 mRNA downstream 227649 11907926 ~ 11915984 (-) True prim1
XM_034312069.1 mRNA downstream 243171 11894478 ~ 11900462 (-) False naca
XM_026920538.2 mRNA upstream 4783 12155728 ~ 12167795 (-) False ptk6b
XM_026920537.2 mRNA upstream 4783 12155728 ~ 12167792 (-) True ptk6b
XM_026920536.2 mRNA upstream 17582 12168527 ~ 12185778 (-) True zgc:194282
XM_026920532.2 mRNA upstream 36849 12187794 ~ 12285570 (-) True nol4lb
XM_026920535.2 mRNA upstream 36849 12187794 ~ 12283712 (-) False nol4lb
trnae-cuc_33 other downstream 2460 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 250631 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 251213 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 575103 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 680927 11456021 ~ 11462706 (-) False LOC113530309
TU300417 other upstream 7827 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 1978271 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1978271 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1978271 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1978271 14129216 ~ 14146831 (-) False LOC113530423

Expression Profile