RNA id: XM_026920538.2


Basic Information

Item Value
RNA id XM_026920538.2
length 3237
RNA type mRNA
GC content 0.42
exon number 8
gene id ptk6b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12155728 ~ 12167795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCGGGGAAGAAATGAGGAAGTTTGCAGACTTCTTTTTCTTTAGATCATTTCCCCCTGATCAAAAGCGTTCTTTAAATTCTCCCTGTCGCTCAgaagtggagtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaccgGAGCGCGTCTGCCCAGAGAGCGCGCTGTACAGGGACACATGGAGGAGTGTTTGAACAGATCGTGCCCGTGTCTCCGGTCACTGTGGGACCGAATgttcaaaaaagacaaaagtaaCGTCGGGCTCGAGAGGAAAGGCTCGAACAGCGGTGACTTCAAACCGGACAGTGATCCGGAGGGCGCCGTGTACATAGCATTATGGGCTTTCCAAGCGCGCGACAGCGACGAGCTGTCGTTTGACGCGGGAGAGCGGTTCCGCGTGGTGACGCGCGCGGGGGATTGGTGGACCGCCGCCAAACTGGACGCGAGCGGCCGCGTGCTCGCCACCGGAGTCGTGCCGCGCAGTTACCTGGAGCGCGCCGAATCGGTTAAGCTGCAACCGTGGTTCTTTGGCAAAATGAACCGAATTGAGTGTCTCAGTCACCTCCTGACAGATCAAAACAAAGATGGGGCTTTCCTGGTGCGAGTCAGTGAGACTGACAATGTGGGCCATGTACTCTCAGTTAAGGTAAACAACAAAGGAAAGCACTTTAAGATCTATCACTCAGCGAATGGATTCTACGTGGACGAGTCCTGCAGGTTCTCCAGTTTGCTGGAGCTTGTACAATACTATCAGAGTCATCCTCTGGCCACTTTGGACAGACTGGGAAAGCCCTGCGTcaggAGAAAGCCCAAGCACCATGACCTGTCTCACACCACAGTGGACATGTGGGAACTTCCCAAAGAGGACTTCATTCTGGAGGACAAGCTGGGCAGCGGTTACTTTGCTGATGTTTATCGGGGCAAGTGGAAGAACCAAACCTACGTGGCCATCAAAGTTCTCAAGAACAACGAGTCTCTGAACCAGCATACGTTTCAGATGGAGGTTGAGGTTTTGAAACAGTTGCGTCACAACCACCTTATCTCACTCTTTGCAATATGCACTTCCTCCATCCCCTATTACATCATCACTGAGTACATGGAGAAGGGAAACCTACTGGATTTACTCCGCAAGGGCAATGCTTTAGACCTGGAAATTTTGACTGACATGGCATTCCAGGTGGCTGATGGGATGACTTACCTGGAAGATCACAATAGTATTCACAGAGACCTGGCAGCTCGCAATGTTCTTGTTAGTGAAGGATACCTGTGCAAGGTGGCTGACTTTGGTTTAGCGCGAATTATCAAGGAGCCGATCTATTTGTCTAATGATAAAAAGATTCCATTCAAGTGGACAGCTCCTGAAGCCATCGAACATGGCATTTTCTCGAATAAATCTGATGTCTGGTCTTTTGGCATTCTCTTACATGAGATTTATTCTTACGGTGCAAATCCGTATCCAGGTATCGCTAAAAAAGCTGTATTTGAGGACATCAAACGTGGCTACAGGATGCCTGCTCCTTCCAAATGTCCTCACTTCATCTACAAGATTATGCAGTCCTGTTGGAGCAAGCAGCCAGAGGATCGGCCAGATTTTAAGAGGCTGAAATCTGAGCTTCAGGAGTGCATTGACCGCATCGTTTAGCTCTATATATCCCGTatgtatatagtgtacataattttttttcagtgcaatgtacagtgtgtgatatGGTTTTTGACTTCGTAAAGTTGCTGTGTAAAGTTTGTTTAATCTCTTACGGATTTAAGACAGTAGCACACAAAATGTCCTAGTATATTAATTGTATACATTGTATTAACTGTAATTATATAAAGTGTATTAATTGTTATATAGACATCATGTAATGGTGTAAAGTACATGAGAAGCTGCTGTAATGATATTGTCAAGATGTTAAAAACCTGGAACAGTTCCAGTTTAACAAGCACAATGCACTGTAATCATCAGCAACAGTAAAATGTGTGATTCTGCTTTAAGATATGTTCTTATTGTCATGCACTGACACTGTACATGATAATGAGAACAGAGTTTTAATGGAAGCATATTTCATTAGATTTGTATTAGCATATTTCATTAGAACAATTTAAGTAATTGTTGACATATTTTCTTAAATACAGTTATTTCCTTGCACTTGCGGTATGTGACTGTAGACATTTTTCTCCAAACCAGAACTCAATCATTGCAAAATCGACTTATAGGCTAAAACACTGGCTAAAGTAGTGATCATGAAAAGACAAAGCACATGCTTTTGGGTTCAAGTTAAAGCATAAGCAGATTTCAAAATGGGCTATCCTTACAGCTTAGGCTTCATATATTTATGGGATGGAACAGTGCTTTTGAAACATTAGCAGTGTTTAAATAATACAGCCTCTGATAAAGTAAAGGACGTTGGCTAACAGATTATAGAAAGATCAGATTacttcttgttattttttttaaggatgGCTGAAAAACTGGGGAACACACATGCTTAATGACTGAAAAACATAAACTATTGACTAGAAAACTCATTACCCAACTTATAACTtggtgaaatgttttttttttttttaattagctcaTCTCAACCGATTGATTTAAGCCATAGTTTCTGAACCTTGAAGTACCCCAGGTCCTACAGGGTTTTCATTGCTCCCAATACACTTAATCcaattaatcagctaattaacagtcCTTCCTgggttgaagtgggtgtgttagagcagtgaaacactaaaatgtgcagcaCAGAGTGTACTCCATGACCAGGGTTGAGGATGTGTGATTTAAGCTTAAAGCAAATGCTGCTCatgctcctgctcctgcagcAGATTAATTAGTATGTTTTCCAATAAGGTGCTTCATGCGGTCTTGAATGCCTGTGCACTCTTTTACTATCTGCctcctgtatttatttttaatgataattaCTATTTTGTGTTCTATTGACATTatgtgtttagattttaattgtTGACAGGCAAAAAATATTGCCAATTTAGGTTCTTAGGCTGTAGTCTATATTTATGGCAGACTAGGAACTGTTGCAGTGGAGGTTGCTGTACAAACATCACTGATTGTGCTTCACAGAATgatcaaccctgttacctgtgTTTAACTATCAAGGTATTCTTTGCACTTCAGATGTGCATGACTGCTgctgctttaaaaatgtattaacatCATATTCCtgcaacaaaagaaaaacaataaagcaCAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403159.2 lncRNA downstream 4783 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA downstream 4867 12143714 ~ 12150861 (-) False LOC113530483
TU300190 lncRNA downstream 251042 11904277 ~ 11904686 (-) True G253538
TU300144 lncRNA downstream 296382 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 377795 11777718 ~ 11777933 (-) True G253509
TU300430 lncRNA upstream 49629 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 224568 12392363 ~ 12393653 (-) True G253843
XR_003403193.2 lncRNA upstream 438746 12606541 ~ 12607682 (-) True LOC113530910
TU300710 lncRNA upstream 493449 12661244 ~ 12709317 (-) True G253977
XR_004579658.1 lncRNA upstream 524550 12692345 ~ 12714075 (-) True LOC117599211
XM_026920760.2 mRNA downstream 68007 12083985 ~ 12087721 (-) True gid8b
XM_026920758.2 mRNA downstream 72195 12068589 ~ 12083533 (-) True slc17a9b
XM_026920289.2 mRNA downstream 223233 11926906 ~ 11932495 (-) True rnd1a
XM_026920875.2 mRNA downstream 239744 11907926 ~ 11915984 (-) True prim1
XM_034312069.1 mRNA downstream 255266 11894478 ~ 11900462 (-) False naca
XM_026920536.2 mRNA upstream 732 12168527 ~ 12185778 (-) True zgc:194282
XM_026920532.2 mRNA upstream 19999 12187794 ~ 12285570 (-) True nol4lb
XM_026920535.2 mRNA upstream 19999 12187794 ~ 12283712 (-) False nol4lb
XM_034311892.1 mRNA upstream 19999 12187794 ~ 12283044 (-) False nol4lb
XM_026920136.2 mRNA upstream 138358 12306153 ~ 12316352 (-) True commd7
trnae-cuc_33 other downstream 14555 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 262726 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 263308 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 587198 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 693022 11456021 ~ 11462706 (-) False LOC113530309
XR_004579685.1 other upstream 1961421 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1961421 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1961421 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1961421 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 2531477 14699272 ~ 14704270 (-) False G255071

Expression Profile