RNA id: TU300495


Basic Information

Item Value
RNA id TU300495
length 402
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G253798
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12366060 ~ 12366461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccagattcttgttcttggctgacaggagtggaacctgatgtgctcttctgctgttgaaacccatccacctcaaggtttgatgtgttttgctttctgagatgcttttctgctcaccttggttgtaaagagtgcttatttgagttactatagacttcctgtcagctcagaccagtctggtcattctcctctgatctctctcatcaacaaggtgtttcagcctgcagaccctccgaaCACACgtgatgttttttgtgttttgcaccattctgtgtaaattctacagtctgttgtgtgtgaaaatcccagatcagcggtttctgaaatactcaaaccagcccatctagcaCCAACTACCACACcactgttaaagtcacagaggtcacatttttcttcagtctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300257 lncRNA upstream 282404 12083043 ~ 12083656 (+) True G253599
TU300249 lncRNA upstream 352565 12013279 ~ 12013495 (+) True G253593
XR_004579668.1 lncRNA upstream 373939 11991640 ~ 11992121 (+) True LOC113530280
XR_004579667.1 lncRNA upstream 391516 11946332 ~ 11974544 (+) True LOC117599216
TU300200 lncRNA upstream 424823 11939079 ~ 11941237 (+) True G253548
TU300538 lncRNA downstream 35153 12401614 ~ 12406705 (+) True G253835
TU300551 lncRNA downstream 50496 12416957 ~ 12419048 (+) True G253846
TU300555 lncRNA downstream 55637 12422098 ~ 12423038 (+) True G253847
TU300556 lncRNA downstream 55637 12422098 ~ 12422999 (+) False G253847
TU300554 lncRNA downstream 56253 12422714 ~ 12422999 (+) False G253847
XM_026920662.2 mRNA upstream 1912 12316915 ~ 12364148 (+) True dnmt3bb.1
XM_026920661.2 mRNA upstream 1912 12316915 ~ 12364148 (+) False dnmt3bb.1
XM_034311868.1 mRNA upstream 1912 12316915 ~ 12364148 (+) False dnmt3bb.1
XM_034311869.1 mRNA upstream 1912 12316915 ~ 12364148 (+) False dnmt3bb.1
XM_026920660.2 mRNA upstream 1912 12316915 ~ 12364148 (+) False dnmt3bb.1
XM_034311978.1 mRNA downstream 152 12366613 ~ 12385996 (+) False LOC113530266
XM_034311980.1 mRNA downstream 201 12366662 ~ 12385996 (+) False LOC113530266
XM_034311982.1 mRNA downstream 286 12366747 ~ 12385996 (+) False LOC113530266
XM_026920095.2 mRNA downstream 290 12366751 ~ 12385996 (+) True LOC113530266
XM_034311981.1 mRNA downstream 1025 12367486 ~ 12385996 (+) False LOC113530266
TU300294 other upstream 222533 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 244688 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 465696 11892150 ~ 11900364 (+) False G253367
XR_003403199.2 other upstream 950611 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other upstream 950611 11400036 ~ 11415449 (+) False wu:fa11c10
XR_004579730.1 other downstream 282 12366743 ~ 12384574 (+) False LOC113530266
XR_003403145.2 other downstream 470590 12837051 ~ 12850995 (+) False rbbp8l
XR_004579688.1 other downstream 1703767 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 1703808 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 1703808 14070269 ~ 14072216 (+) False wfdc2

Expression Profile