RNA id: XR_004579658.1


Basic Information

Item Value
RNA id XR_004579658.1
length 3598
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC117599211
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12692345 ~ 12714080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCGACACCCGCCCCGTGTGTACCATTAACACATTGCTCtagattatgtttttttgtttgttttttttaatctaagatCATCACGGTCATGTCTGGCTGCTTTGTATCTAATGCTAAtcgattttttttcctgagatcCGCTGCGGTGACGAATTTTGATGGCATTATTAACCAGGCTGACCCACTTCTTTTTGGCTTTTGGGATGGACAGGAGTGTGCGACAGTATGGAATATAACTTAGAGACCAGTTTGACGAGATCCCAGggaataaagacagaaaaaccaTCACTAAGCTTCATCTTTCCGGTGCTGttactgcattttctttttctctctcctaaTGTCAGCACACTGTCCATACTGTCTCCTACTCCTGTTTCAGATCCCACAGGATGTAGCTCAGAGAATCTGGCTTTCGTAGGACAGGTGGGAGGATGGGGGTGGGGTTTCCTCTAAAAGTACCATGATGCATTGCCAATCAGACATGCCCATACTGTGATGAGATGGGCTGGAGGCCTATGATTGCCAAAGTTATTTTTAACCTACCTTGCTCTGTTCCTCCAGCCTTtctattttgtttcatttcaactTTTTTTCCCTGTGCATCATATGAAGAAGCAAGACACCTCCAATGTCACTGCCTCCTTTTCTCCTTTCcatctcttttattttcacctccttttctcttttccaccctctctctctctctctctctctctctctctctctctctctgtctctccccttctctctgcTCTCATCCTTAAACTCTCAAACGCTGATTCAGCTGCTGGTATACAGACGATCCTGCTGCCATCCCCATCCAGTACAGCTTCTCTCGATTTGGGCTGCAGCCGTGAGCTCCAGCACTACTGTCCCACTCATCCCAGAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCTATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCACCCCAGAGGGCagtgagatagacagagaaGATCTGggagcacacaaacacatactaaCACTCTACAGGATTCACCTTATGACCATGTCTGACAGGATCTGAACATCCAAGGAGCTGTCATATGGATTCGTTGATCCAGCTAGAACACCAACCTGATACACTTCACCCCACACATTATAATCTCTAATAACATGATTAAACACTGTGAGGTTATTAAAACCCAGGTGAACATTAACCATTCCATGCTGTTCAACTCTTTATGACTGATAATATCGGATTATGAATCCAGCCCCATTCGCTGTCACTGGAATATAGGCTTGCTGAGCTTTATGGCTGCCCATTGATTTCTTGTCTTGctggtgaaagagagagatgtggagGGACAGGATGGGAGAGAGGGCTGCACGTCAAGCTGTTGAATAAGTAAAGCAATCGttccttttctcctctttttcccCCACACACTTGTCGTGATCCTTAATGCACGTTTCTGATCAATAAAAGCTCATCCTGAGGTCCATAAATGCTGaagtgggtgtttttttttaaatgctggcTTCTTGATGGAAGGAGGAAGGTCAAAGTGAAGGGAAATGGataggaagaaaaggaaaataagggaagatggatggatgtatggagGACAGGAGTTGGCAGATTGACATGACAGTGCAGAAGAACTGTGAATAAAGGAATGGgtaacatgatgctaccacacAATATCCTAGATTCTAGCATAGGCTTGTTACGGGAATTGAATATTCAGATTAATATTCTAAGGACTAATTAAGGCAACACTAACCAAATATCAGGCAAAATAATCCTGTTCATTACTGAAACCTTAACCATTTGTAACATTTAGTCATGATATCATGTTAGTTAAACACCAAGGTCTCCTTCACACAGCATATTTTGCTGGTATAACAGCAGCACATAGCAGATTTGGTTGGGCAggaactttctttctttctttctttctttctttattacttactgacttacttatttacttatttgttgcTTGTTTGTATTTATCAAGTTGTGCCCAGAAATGAATATGACAATGTAGACCATATTGGGCAGCAGTGAACAGGAGGTGTGACAGCTGAAATCTGCTGGTGCAGTGGGACTTTTAAACCTACTTTGACCCAAAACTGCTGGAATTTCTGACTTCATTGCTCACAAGCCAGTTTTGTGGATGTACTCTGCTTCTGTCAATAGCCTTCTTTAACCAACTATTAAATACTATCGtctgtattattttaaagtgacaaataaaaacaaacaaccaagTTGTGGCTACTAAATGTGAATTAGACAGTTGTCACCTTATTGCACATGGAACATCATATAATGaatagatttaataaaattacataacTAAGAGATGAGAAGTTAGCCAATATAAATGCTTTGAGCTAGAGCTTTGTCAAAAGGCAGCTCTGGCTCGGAGGCAGGAGGAAATTAATTGGTTCAAACAGCCAACTGCTGGAGCTTACTTTTCGAAGGTTTGCATTAATTCCCTAGCCAGTAACAGTACTGCTGTTTGTTAGCTTGGCTTTTGACTTTTGATTTTGACTAAAAAAGGGGTTCTTATTTATATGATGttggcaacaaaaaaaaaaatgtccattttcTGTTAGTGGTGTTAAATTAGTTcgtttttgttaaattaaaaaactgtTCAGAAAGCTACCTACACTCTATAATAAGGTACATAAGCCATAAACTTGTCtgatcactaacattagcttaTTAATTAGCTGGCAACAATGTCATCAACAACTTTTGGATATCTAGCTGGCTTGtaacttaaatatttaaataaagtgtgcCATTCTACGAGTCACCATGCTGAGCAGCTCTCACTGTGTATCTCAGCATCCTTTACACCTcttgataaaatattaaaacaaacccCAACCTTTTGTAAAATTACACCACTCTGGGTCACAATACCACCTGTgctgacagacagaaaaatatataatgtactgtatgtgccaTAACTTCATGTCCTAATGCCATGATCTTTTGTCGGGTTTTGCCATTTGTATTATGATCACAGGAATGTGTAAGTTGCCGTGTTACACCAGCTCCACCTCATCATTCCCCTCCTTCAGGTCGACCTAACCTCTTCTGTCAGCCTTGTTATGTGGTGTGGTAATGGTCACAGacgtttgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagggggaAACAGAGCAGAACCATTTCCCCTGTGTAAAAGATTTAATTCTGTTATTTGTCTTTTACTGGCTGGTAAAAGATCCTATTACAAAATTACTGGGGtgaatctttctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacgggcaaaGCACATGGACAAATTACTGTTCACAAAACATCGAAACCAGGGATATGTAACGAGGTTTTAAGCGAGGTTTCACCAGAATAATTGAGAATCAAATATtaactgtactgtatgtaaagtaCATGTACTACATGTAAAGTACTGTACTGCATGACATGGTAAAGTTCTTCTAAATCAACTTGATCTCATGAATAAATTGTgcaaattcaaacaaattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403193.2 lncRNA downstream 84663 12606541 ~ 12607682 (-) True LOC113530910
TU300547 lncRNA downstream 298692 12392363 ~ 12393653 (-) True G253843
TU300430 lncRNA downstream 474601 12217424 ~ 12217744 (-) True G253749
XR_003403159.2 lncRNA downstream 541400 12143633 ~ 12150945 (-) True LOC113530483
TU300797 lncRNA upstream 94305 12808380 ~ 12808599 (-) True G254052
TU300820 lncRNA upstream 183409 12897484 ~ 12898568 (-) False plagl2
TU300819 lncRNA upstream 183467 12897542 ~ 12902277 (-) False plagl2
TU300848 lncRNA upstream 209644 12923719 ~ 12924012 (-) True G254101
TU300856 lncRNA upstream 218144 12932219 ~ 12932420 (-) True G254109
XM_026921372.2 mRNA downstream 37524 12615024 ~ 12654821 (-) False slco4a1
XM_026921371.2 mRNA downstream 37524 12615024 ~ 12654821 (-) True slco4a1
XM_034312213.1 mRNA downstream 38485 12615024 ~ 12653860 (-) False slco4a1
XM_026921119.2 mRNA downstream 119837 12545673 ~ 12572508 (-) False ntsr1
XM_026920426.2 mRNA upstream 183399 12897474 ~ 12934308 (-) True plagl2
XM_026920427.2 mRNA upstream 183399 12897474 ~ 12904007 (-) False plagl2
XM_026921111.2 mRNA upstream 261369 12975444 ~ 12987137 (-) True LOC113530792
XM_034312114.1 mRNA upstream 281345 12995420 ~ 13028887 (-) False myt1b
XM_034312115.1 mRNA upstream 281345 12995420 ~ 13028887 (-) False myt1b
TU300417 other downstream 532985 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 551172 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 799343 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 799925 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1123815 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1415141 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1415141 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1415141 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1415141 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1985197 14699272 ~ 14704270 (-) False G255071

Expression Profile