RNA id: XM_026920426.2


Basic Information

Item Value
RNA id XM_026920426.2
length 6819
RNA type mRNA
GC content 0.40
exon number 4
gene id plagl2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12897474 ~ 12934308 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCCAGAACTCTGGCGCTGCAGCCTGAGGAGAGCGAGCCACTCAGGCCCCGAAAAAACGCCAAAAATTAGAGaaaaatttggaaaaattaataaagcatCAGATCGTGAGGAGAAAGGCCGGGAAAGGTGTCGTGGGCTCTCCCGCGAACAATCAAAATGAGCAGTACTAATATCTACTGGACACCACCCATGTCAGTTGGGActgggtgaaagagagagagagagacagcttgcttttttttctggaagTTCTGAACCTAAAGAAGGATTTTTCAAAGCGGAGACTGCATAATCGAACCTGAGAGAACCTGCCCCCTTAAACTCCACCCCCAGGCACGATCCAAACAGAGCCTGGAAGGTAGGGCAGCCACGGCCGGGGTTCAATGGCAACGGCACCATAGGGCTGCCATGGCAGCAGCTGCCACCGATGCCCCACACCACATAACCACACTGACGCCGGAGGACGAGGATCGACGAGCTGCCCCCAAACTGTTTGGAGGTCCAGCTCAAGTGAGGacggagagtgagagagagaaggagacagagaaggagaaaagcGGCAACGAGTGTTTGGTGTGTGGCACCCTCTTCAGCTCACAGGATAAGCTTCAAATCCACACATTCagtcacacaggagagaaacctTTCCACTGTTCCCAACCTCACTGCCACAAGGCCTTCAGCTCCAAATATAAGCTCTACAGGCATATGGCCACACACTCCCCACAGAAGACCCACCAGTGCTCATTCTGTGAAAAGATGTTCCACCGTAAAGATCATTTGAAAAATCACCTGCAGACCCATGACCCCAACAAAGAAGCTTTTAAGTGTGAAGAGTGTGGCAAGCACTATAACACAAAGCTAGGCTACAAGCGCCATGTGGCCATGCACTCTGCCACAGCGGGAGACCTGACCTGCAAGGTATGTTTGCAGAGCTACGAGAGCACTCCTGCCCTCTTGGATCACCTCAAGAGCCATTCTGGCAAGTCTTCAGGGGGCACCAAGGAGAAGAAACACCCATGCGATCATTGTGACCGTCGCTTCTACACCCGCAAGGATGTTCGCAGACACATGGTAGTGCACACTGGTCGCAAAGATTTCCTGTGCCAGTACTGTGCCCAGCGCTTCGGAAGAAAGGACCACCTCACACGACATGTGAAGAAGAGCCACTCACAGGAGCTGCTGAAGATCAAGACAGAGCCACCAGATATGCTGGCTCTGCTTGGTTCTGGCTCTCCAACTTGTGCTGTGAAGGAAGAGCTCAGTCCTATGATGTGTAGCATGGGCCCCAACAAGGACTCCATGATGACCAAACCTTTCCGCAGTGGCACCCCTTTCTCTATGGGCATGTACAACCCACACCACCTCCAGGCCATGTCCAGCCCAGGAATGGGCCACCATCACTCCTTGGTTCCTGGGTCACTGTCCGCTGCTATGGGTATGGGTTGTTCCATGGAGCCTCCTTCAGCCTTACACCACCATCATCcgcatcatcatcaccaccacccacACCATCCCTcccctccacctccacccccACCACACCAGCAACAGACTCCACTGCAACCCCAACCCCAGCAGCAGCATTCCCAACCTCCCAAGTACCAGCTCGGATCTACCTCATACCTGCTGGATAAGCCCCTAAAGGTGGAGATGGAGAGTTACCTGATGGATCTGCAGAGTGGCTTGCCAGTCCCACCCCCACCTTCGGCTGATCCCCATTCAGCTGCCTCACCTAATAAAGATGGTCTGGAGCCTCCACCTGGCTTAACGGATGAGCTATGTGGGGATCCCCTCCTATCTAAAAGCCCTGCCGTCATTGCTGAATCTCTGTGTGCTGCTAACATGGACTTCTCCCATTTACTGGGCTTCTTTCCGCTAAACCTGCCTCCCTATAGCACTCCCATGAGTTCGGGAGGCCTGGTGATGGGCTACTCCACCTCCActgcctcttcttcttcctcatcatcgTCAGCATCTTCACATGCTGCCGAGTCTCATGCTGCCACAGCAACAGCCTCAGTGCCTCTTACCTCTTTGCAACCTCAACCTCAGGAGCAACCAGGCTCCAGTGGAGGTCTTGGTCTCGGGCCCCTGCACCCACTCCCACCAGTGTTTAGCTCCAGCCTTAGCACAACCACCTTGCCTCGCTTCCATCAGGCCTTTCAATGAGGCTCCCACCCCACCCTGGCCTGCCACAGGCTGAGACAACTGAGGTGGCCCGGGGAAAAGGAGCTTTAGGGCTCCCTCTAGGGGTgggagaataaaacacttgaacACATAGAAGCCTTAATTGAAGCGCACAAATGCTTTTAAATGAgcctggaggaaaaaaacatttattttcaaaaacgAAGTAAAACATAGGAAGTAAGAATACCATGGAGCTTTTATTTAGGCTTTTCCAGCTATATCTTAGTTAAACCTTTCCCTCAGCCCTTGTGTCAGAAAATTCCTAGTTAGGGAGCAGCATCAGCAGGCCTTTAAGGCATGGTACCGCATACtttataaagtaataatatgAGTTGGAGAAAGGCAAAGGATAATGTATAAAAAgtcttaaatgttttttaagaCTCTTAAAGAATAGTTTGAAGTTATTaagcttttttgttgtttgcttttACAAATATGAGACTTAATTTATATTGTCTCTATTCTATTAAAGTCAGGTATCATTTAATCGCCCTTAAACTAAAACTGCCTTGGCAGCCAGGAGAGGAAAATTAGTGGAGGAATGAAGTAGTGATGTTGCATAAAAAGTTCTCTCCTCTTTCACAGccaaaaaacaaattcattgTAAAATTATACAACAAATTTTCCTGTAAAATGGATTAGTTACAGTCGTTTAGACCTTATTTCCCCCAGTATATTACATactttaacatttacaaaacacaCTTTAGTATAAACAAGTTGCCCCATATAAATGCGTACTGCTCTTCTAAAAGGTATTTAATGAAAATACACAGTAGATTGTGTGCGAGAGTTATGTAAGCAAGGTAAGAGATACAGTAAAAGGAAGAAGGCAAGAAAGGCAGCAAATAAACTGCACAATTTTACAATCCTGCTTTTATACACTGTGACCATTCAGAACTAAGGACAGATAAAAGGATAATGTAAAAATCGTACAGGCTTATGTAAGTCAAAGGAAGCACTTTGTTTACAGCAGAAGGCACTTGACCTTTTTGGGTTCCCTACTTCCTGAAACAATTTACCTTTTTCTTCCTAGCCAAGCTTCTTACAAACAACCACAtcaagtttatttaaaatataaattctctagtatttaaatgattaaagcGCTTCATAATGgtttccttcttccttccaGCACTAATTTCAatatctccatttttttttttaacctccagTTCCTGCCCACCTTATTCTAATATGTATGTTAGAATACGCAAAGATTTTAGGCAGGCTAATAGAGTTAATAGTTAAATGGTAATAATCACCCTGACATATGTGAATAGAAAAGAAATGACAAgatagggaaaaaaatctacaagagtatttttgcagtgtacgaaATACCACatcaaaaagaaatatataattgcttttattttagtaaaatgtACTTTAGATAGACGTATTAAAAATTGCTGATGgaatttttacaaaaacaaaaaagtcaggTTTACATAATTATGTAACCTTGGTTAAAAAATGGATGAAGTAATGGCTTTTCATTATAGTCTTCCCTGTACTATTtgttctattctttttttttttttgtatgtgggTCAAAGGATGATATTTTGACCCATGTGTAATAGCCTATTAGTAGAATAATCAAGTAGAATGAACTACTCTTTAATCTTTAGTGTTGCTTAGAGAGGCCCATAATGTGACCCAATTTTGATCAAAATTATTCTCTTTCAGTATTGGAACAGACCTGACAGATGTTTTTGGTGTGGCTCGCATCCTGTGGTCATTATacaattatactttttatcaatttatgAGAGCAAAGCAAAACCCTAACTCAACGCACTGCAAAATGATGtgctaataattttgtaaaaaaacaaaacaacagaacaacaaCATATAATCCAGTCATGTTAAAGACAATTTCAGAAAGAGTGGCAAATTGATTCCCATAAAatgatgctgatgatggtgCTGTTTTCTCCACTAAGGTAGTGCAGAAATCCACCTCAAATTAATTTATCCATTACAAGAATGGCCAGAATTTAATTTTTGCCCATCCCTAGCCTTGTAGTAAACGTGAAAGTCAAGTTAAGAATGAAATTGCTCAAATGCGAGGCCACCCcccaaaatgaattaaaaaaaaaaagttatgatgCTGCTTTAGCGCTATGGTTGGCAACAGTCATAGACCACTTCTGCAGAAATCCTTCTGCAGAGATCTTTAAACTGAATACGTGAACTGTTTGTCCATTTCTGTTCTCCTTTTACAGCTGCTTCTTCCAttcaaatgaacatttttatcaAAGGGTCTGAAGAAAGACAAAATACCCAGAACAAATAAGTCACCAGACTGGTCTTTGACATTCAAAGCATGGGACAGTTGATTGGGATATTGCCTAGTCGTTTGTtgtcatattatatattattttctgtttgttgaAACAGGACctcaaaacaacacaacacatcacctcatttaattttattatacatatatatattttttttgcataccaAAAACCTGGGGAGAAGAAACTTCTTTTTTGCACAATTGCTAACTAAAGAGCTAATATTGAGataatatttttgcatataCTGTAAGAACGATCGCTACAACTGATAGGTTCTGAatgaaaataagaagaaagccaaatatgcatttgaattttttcTCCCATTCCTTTATATTCACAATTGGATTGTGTGAAATCTTGTTTCAAATTTAAAcaactttttgttttgtgtttggattacataaattaaaaagtgtattGTTAGCATTTATTCCCCTTTCTATCgtatttttttttgatgaagggggaaaaaaaatttatttgacAGGCACTTTGAAATGTAAAGgtgtttaaattaaaagtcTTACAAGTCAAATTGATATGTGGGAAAAGTATGACAGGTAGCAATTCTAACCAGGTCTAAACTGCATAAGCAGTATAAGtaataaagctaattaaagctatgcatgtttcttcaaaaagaaataaaaaaagaaataaagaaagaagttATTTTGACATGAGAAAAATGTTCAACAAGAAGCTATTGGCAACTTCTGAGTTTGTCCTCCCCGGGTTTTCTGTGAGCTGATCTGAATTCTAGCACTTTTAAACCTTTGaaaagagtattttttttcttgaaatttcAGCcgtatgtgtttgtatttttttttattttgtatttgatcTTGTACATGTATGTGCCATTAGTTCAATGTGTAGAATTTATTAAtctatatgtattttttttccctcctcttcCAAAGGAGTAACAGTATTTTTTGATAGACTTTCACTAATATTTGCTGCGTTTTGCCCCAGCTCTTCTAGCTTTGTGCATTTTAGGACTTGAGAAACAGCAAGTGTGCTTGTGCTTAGCTTATCTTTCAAACCCTTGCTGTAAAAGTCAGTTTAACACAATTCAAAGCTGCAACCTATTTctgcaaatgcaaaaaagaaagagttggagaacaaagaaaaacaaaacatcagtTCCTcccatgatcttttttttttttttttttttttttaattaactaaatATTACAGAGCTGACAGGTTTAACTGATTTACTGGATTGAGTGAACTCCCTTCAAATTAAGTTTTGTCAGATGTCAGGGGGATTTTATTGAACATGGTGATGGGTAGGCATCCAACCAGTGCAGCATTTGAATCACATTTCCAGTTGTGCCCTAGATTAAGAGGAGGCTTCAAAAggtgtaagattttttttcaggctaATCTCAGTCGTGCTTCTGTGCCCTTTAAAAAAGAGCCTCTCACCCACCGAGAACTTTTAGCCAACATCAAAATGGActttgaaacaaaacaacaacaaaaaaaacctcaaggAGCTCCCCTTCTAGTCACCTCTGATGGTTCAGAGTCCATtggaagagaggaaaaacattgaaagtgtgtgttgtgattaAGGGAAAGTTTATTTGATTTCTAATTTGATACCCTCTCTATAATCATGTATCCCGACTTCCTTTATGattgattaaaaagaaagaagtccTTTATCTCCACTGCACCTACTAGGGATGCACTTATCTTATTTCTCCCAATATGTGTAGGAGTCTAACTAAgctattaaaaagaaattattaaaatatcattgatctaaggagaaaaaaaaattacaatctgACTTAAGGAAAGAAATGCCTTGCTTTCTTGAAGAGAAAATGTGCTGTCTGTCGAAAAAGACATCAAATTgtagtttcatttattttagcttAATGTAAGTCTTGCATTCCAAGCTCTTTATGTATCTTGTTTAGCAACATAGTCCTCTTATTTTTAGTACTTGCTTATTACTGCCACCcctgggaaagaaaaaaaagtgaaagaacaaaaatggGACATTTTCATTCATCCTTACACTATTTTATATAGCATGGGATTTTATCAGCTACAGGGAGAATTGTATAAAAAGTATATGACAACCAGTCCACTTTGTATCACCTACAATCAGTTGCTGCAATGTAAAGAGACAGATATGTATATTGGTTGATCCAAAGAGATGACATTACAACAAAACCTATTTACTTATTGTACAGAGCATTGTACCTTTTGACTTGTAATGTATGatgttaaaatcattaaaaaaaagacaaacccACGGTTTTATA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K19486 PLAGL2; zinc finger protein PLAGL2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300797 lncRNA downstream 88875 12808380 ~ 12808599 (-) True G254052
TU300707 lncRNA downstream 183394 12693619 ~ 12714080 (-) False LOC117599211
XR_004579658.1 lncRNA downstream 183399 12692345 ~ 12714075 (-) True LOC117599211
TU300710 lncRNA downstream 188157 12661244 ~ 12709317 (-) True G253977
XR_003403193.2 lncRNA downstream 289792 12606541 ~ 12607682 (-) True LOC113530910
TU300854 lncRNA upstream 34056 12968364 ~ 12970011 (-) True G254107
TU300905 lncRNA upstream 206703 13141011 ~ 13141219 (-) True G254153
XR_003403150.2 lncRNA upstream 266711 13201019 ~ 13202631 (-) True LOC113530405
TU300928 lncRNA upstream 316832 13251140 ~ 13251353 (-) False oprl1
TU301036 lncRNA upstream 493982 13428290 ~ 13488493 (-) True G254270
XM_026921372.2 mRNA downstream 242653 12615024 ~ 12654821 (-) False slco4a1
XM_026921371.2 mRNA downstream 242653 12615024 ~ 12654821 (-) True slco4a1
XM_034312213.1 mRNA downstream 243614 12615024 ~ 12653860 (-) False slco4a1
XM_026921119.2 mRNA downstream 324966 12545673 ~ 12572508 (-) False ntsr1
XM_034311642.1 mRNA downstream 324966 12546046 ~ 12572508 (-) False ntsr1
XM_026921111.2 mRNA upstream 41136 12975444 ~ 12987137 (-) True LOC113530792
XM_034312114.1 mRNA upstream 61112 12995420 ~ 13028887 (-) False myt1b
XM_034312115.1 mRNA upstream 61112 12995420 ~ 13028887 (-) False myt1b
XM_034312112.1 mRNA upstream 61112 12995420 ~ 13028887 (-) False myt1b
XM_034312111.1 mRNA upstream 61112 12995420 ~ 13028887 (-) False myt1b
TU300417 other downstream 738114 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 756301 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1004472 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1005054 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1328944 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 1194908 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 1194908 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 1194908 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 1194908 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1764964 14699272 ~ 14704270 (-) False G255071

Expression Profile