RNA id: TU300872


Basic Information

Item Value
RNA id TU300872
length 211
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G254123
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12993002 ~ 12993212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaaaagtggtccaaggaaggacaaccggtgaactagcgacagggtcatgggtgcccaaggctccctgatgcgcgtggggagtgaaggctagtctgtctggtctgatcccacagaagagctattgtagcacaaattgctgaaaagttaaagctggctatgatagaaaggtgtcagaacacacagtgcatcacagcttgctgcgtatggggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300771 lncRNA upstream 22993 12968371 ~ 12970009 (+) False kif3b
TU300770 lncRNA upstream 22993 12968408 ~ 12970009 (+) False kif3b
TU300743 lncRNA upstream 58701 12933229 ~ 12934301 (+) True G254006
TU300744 lncRNA upstream 88636 12903970 ~ 12904366 (+) True G254007
TU300742 lncRNA upstream 90625 12899453 ~ 12902377 (+) True G254005
TU301054 lncRNA downstream 514339 13507551 ~ 13507783 (+) True G254287
TU301177 lncRNA downstream 620126 13613338 ~ 13613537 (+) True G254403
TU301178 lncRNA downstream 620735 13613947 ~ 13614240 (+) True G254404
XR_004579672.1 lncRNA downstream 728072 13721284 ~ 13722885 (+) True LOC117599220
XR_003403196.2 lncRNA downstream 730153 13723365 ~ 13727382 (+) True LOC113530938
XM_034311965.1 mRNA upstream 22994 12959011 ~ 12970008 (+) True kif3b
XM_026920895.2 mRNA upstream 24918 12956130 ~ 12968084 (+) False kif3b
XM_034311565.1 mRNA upstream 37961 12949732 ~ 12955041 (+) True pofut1
XM_026920269.2 mRNA upstream 37961 12949733 ~ 12955041 (+) False pofut1
XM_026920425.2 mRNA upstream 96079 12876035 ~ 12896923 (+) True tm9sf4
XM_034311641.1 mRNA downstream 175302 13168514 ~ 13189682 (+) False npbwr2b
XM_034311640.1 mRNA downstream 178979 13172191 ~ 13189682 (+) True npbwr2b
XM_026920336.2 mRNA downstream 178979 13172191 ~ 13189682 (+) False npbwr2b
XM_034311639.1 mRNA downstream 180799 13174011 ~ 13189682 (+) False npbwr2b
XM_034312200.1 mRNA downstream 380562 13373774 ~ 13384944 (+) False LOC117599301
XR_003403145.2 other upstream 142007 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 608428 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 849475 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 871630 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 1092638 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 1077016 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 1077057 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 1077057 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 1676592 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 1676592 14669804 ~ 14673952 (+) False G254991

Expression Profile