RNA id: XM_034311548.1


Basic Information

Item Value
RNA id XM_034311548.1
length 2878
RNA type mRNA
GC content 0.41
exon number 3
gene id oprl1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13251140 ~ 13283885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgtattttgtttttgttgtttattttgctgATTAGGTTTCTCTGGGCACAGCTTGGCTCATTATTATAACCCCAGTAGCTCATTCAGATCTCATATCCTCTTTCATCAGCTTCCCCCTCTTGTTCCCTCTATAGCAGCAGCTAATGACCTGAGACCAGCCCACACATTCAGAGCATGTCTGTAGATACCCAAGAAGCATGGTACACCAAGATGAAGACAGCCACCAATATCTACATTTTTAACCTGGCTTTGGCTGATGCATTGGTCTTGGCCACACTTCCTTTCCAGGGCACAGATGTGTTCCTAGGTTTCTGGCCCTTTGGCAATACCTTGTGCAAGGCAGTAGTTTCCATCGACTACTACAACATGTTCACTAGTGTCTTCACCCTTACTGTGATGAGCATGGACCGCTATGTGGCTGTGTGTCATCCTGTCAAAGCTCTGGATATGAGGACACCCCACAAAGCCAAGGTGGTCAACATATGTGTGTGGCTACTGGCCTCTGCCATTGGCGTGCCAGCCATGGTGCTTGGAGATGTTGAGGATGACCATGGCATTGAGTGCATCTTGGTCCTGCCAGACCCCCGCAGCTATTGGGACCCAGTGTTCGGCACATGTGTGTTCCTGCTCTCCTTCCTAATCCCGGTAGccattattagtgtgtgttatagccTGATGGTCAAGCGCCTGCGCAATGTACGTATTTTGTCCGGTTCCAAGGAGAAGGATCGCAACCTGCGGCGTATCACGCGCatggtgctggtggtggtggcagcatttGTCGTGTGTTGGACACCCATCCAGATTATGGCACTTGCACAGTCACTGGGTGTGAATCTGGGCAGTGTGCACACTGTGGTGCTCATGCACTTCTGCATTGCACTTGGCTACGTGAACAGCAGCCTAAACCCAGTACTCTATGCTTTTCTGGATGAGAACTTTAAGCGCTGCTTCCGTGAGTTCTGCCAGCCACCATCTCCTTTCAGCCTGGATGCGCAGCAGCAGTCGGGCCGCATGCACAGCGTGGCGCGAGATGTTGCCTACAACTGCAAAACTACAGAGGCAAACAGTAATGCTGCATGACTAGGCGTGGAGCTGCCCCTGGTCAGCCCGGAACAGCCACCAAATCCAGGGACAGGACACTCTAACTCAGAGCTCACTCAGATCACTGTTCTCTAGCACTGTCTAGGGGTGGAGGAATGAGAAGGACAAGGACTGAGGGTGGGGTCAAAATCAGTGACACACCTAATCTTAGGGACAAAGGGGCTCACTTTTTAGTCTTGTGCAGATTAAGTATTAATGTCTTCATCTTTtgcttgatttgttttttttaaatcatcatttCTTTGTTATTTGGTGGTGACACTAAAGAGATGCTTTTGTGTATTGGTGGCATTTGGTATTTATTTCAATGGGACTACATTGCCTTAAATAGATTATAAACTCTGTCAAAGTTGAAGCTTGAGTGACCTGGATTGAGCTTAACTcacattcttttaaaattaCCTTCCAGTTGACCACATTCcatttaaaacatacaaaacagaGACTTAACTGTTAAAgccagatgtttatttaaaaatgctatttttcctgtttgtcctgtaacaaaaagaaaaaaaaatgtaatattgcaTTGTTTCATGGCAGGTTTATTCTCTAGCATAATTTGTACAGAAGGTAAAAATGTAGTGCATTTAGTGTTATATTAATCGGTGCATACAATGAAGTTAATTAGCATGAGTCTTAGTATTCTTACAGTCATCTGTCAACCATACCTCTGATATTCTTGAATGTTTTGAGTGTACCCAGCATCTTGGTTCACTACCTCGTGTTATGGTGAGTCTGAAACAAGGAGTAAGCTTTCTCATCAGTTTACATCACTGACCGCTGAATGtcaaatgactttttaaagaagccaaaaaaaagttataaatagGTAGAAAGGTTCTCTAGTAGTCTGGAAAAGACACTGTAAACTTAAAAGCTTCTTCATGTATgctgtatttaatgttgtaatgatTTGTTCACTTGCTGAAATGTATtggtttacttatttatttatggaattatttattactgaagaGAATTGTTGGACAAACAGATGCTGAAGCTGCCATGTCAGTTGTCACAATGGAGTCTAAACAATTACTGTATTCTGAGGTTAATATTGGAAATTATCTATATATTTTCTCTGTGTGcattaaatgacattaaatgatACTGCAAAGATCTGTTCCACCTTTGTTCATAcagctggttttctttttttctctctgagcaGCAAGTAATAAAAAACGAGGAAGAGGAAATGCAGAAGTGGGGGTATGTTTAAATTGGAAAAGGCTTTGTGTGGGCCGCATATAAACAAAACTgactttttaaatgtctttatcaCACAGGGAATCATATGAATCAGTTCATCAGTCCACATCTTTCATGCTAATATACATGGCAATGTTAGAATTCTTTTTTCTGCAGAAACATGCATAATTTGCCAGTACAAGGAGTTGTGCAACATGGAGTGTGACAGTTGAAATCCATCAATGCAGTGGTATTTTCCCATCTATTCTAGTCCAAAAATATGTGATACCACCCACCATGACTCGATCTTGGTACAAACACAATACTAAAATGGTATTTTCCTTCAAATCCCTTTGTCCCTTTTCTTGCGACCAAGTTTTGTTGCTGTACACTATTTATGACACCCTACTTCACTCAACTACCTGAATATGACAGATGGCCTTTTTCAAAGGTgtcttaagtccaaaagttgtCAATATTTATATGGGGAAAGTTACTTGTATTCAGAATCTGGTTATTGACATAAATTAATTTTCTGTGGGCCCCAATTGAAATGCAAGACACCTATATG

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0045203 integral component of cell outer membrane cellular_component
GO:0001626 nociceptin receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403150.2 lncRNA downstream 48701 13201019 ~ 13202631 (-) True LOC113530405
TU300905 lncRNA downstream 110113 13141011 ~ 13141219 (-) True G254153
TU300854 lncRNA downstream 281321 12968364 ~ 12970011 (-) True G254107
TU300857 lncRNA downstream 318193 12932725 ~ 12933139 (-) True G254110
TU300856 lncRNA downstream 318912 12932219 ~ 12932420 (-) True G254109
TU301036 lncRNA upstream 170564 13428290 ~ 13488493 (-) True G254270
XR_004579752.1 lncRNA upstream 206465 13464191 ~ 13465215 (-) True LOC117599295
TU301365 lncRNA upstream 332774 13590500 ~ 13590970 (-) True G254568
TU301384 lncRNA upstream 356702 13614428 ~ 13614663 (-) True G254587
TU301397 lncRNA upstream 407167 13664893 ~ 13665473 (-) True G254599
XM_034312114.1 mRNA downstream 222445 12995420 ~ 13028887 (-) False myt1b
XM_034312115.1 mRNA downstream 222445 12995420 ~ 13028887 (-) False myt1b
XM_034312112.1 mRNA downstream 222445 12995420 ~ 13028887 (-) False myt1b
XM_034312111.1 mRNA downstream 222445 12995420 ~ 13028887 (-) False myt1b
XM_026921362.2 mRNA downstream 226327 12995420 ~ 13025005 (-) True myt1b
XM_026921347.2 mRNA upstream 183058 13440784 ~ 13451374 (-) True tcea2
XM_026920173.2 mRNA upstream 368172 13625898 ~ 13632021 (-) False sla2
XM_026920172.2 mRNA upstream 368172 13625898 ~ 13632021 (-) True sla2
XM_026920609.2 mRNA upstream 378086 13635812 ~ 13699042 (-) False ndrg3b
XM_026920605.2 mRNA upstream 378086 13635812 ~ 13699042 (-) False ndrg3b
TU300417 other downstream 1091972 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1110159 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1358330 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1358912 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 1682802 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 871490 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 871490 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 871490 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 871490 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1441546 14699272 ~ 14704270 (-) False G255071

Expression Profile