RNA id: TU301262


Basic Information

Item Value
RNA id TU301262
length 461
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G254472
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13827684 ~ 13832691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGTGTGTGACTTTAATAGATGAGGGCAATGTCAGGCTGTTGCTGGTTTGCGGCTCAGAGGTTGGACCCATCCCGCTGAACAACTCCTCTTCCTGGTGGGCGTGGCTCAGGTTCCTGCTGTTGATTGGTCGGTATTCAccatccagatccactgcataTAGATCTCCATCTATCTCCACAGACAGCGAGCGAGCATAGCGGTTCCTGGAGTAGCTTTTCAGCGTCTTCATTTCTTTTTTTGGACAGCAGGGTCTTTTTCTTCAGCGTGCTAAGTCTGTAGCTGCTGAAGTCACAGTCGCAGTCATCAGACTCTGTGTTAACTTTAGCACTGGTGCTAACAGTGCGTTGGTAAAACTGGGGCTTCATGCTGGACACTGGTTTCCTCACTGCAGAAAGACTGGCCATGCCTTTGCACTTATATAGCCTCAGCTTCCCGGTGGAGTCCTCCACACACTGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403196.2 lncRNA upstream 100302 13723365 ~ 13727382 (+) True LOC113530938
XR_004579672.1 lncRNA upstream 104799 13721284 ~ 13722885 (+) True LOC117599220
TU301178 lncRNA upstream 213444 13613947 ~ 13614240 (+) True G254404
TU301177 lncRNA upstream 214147 13613338 ~ 13613537 (+) True G254403
TU301054 lncRNA upstream 319901 13507551 ~ 13507783 (+) True G254287
TU301436 lncRNA downstream 199425 14032116 ~ 14032333 (+) True G254633
TU301453 lncRNA downstream 222525 14055216 ~ 14055962 (+) True G254644
TU301465 lncRNA downstream 235568 14068259 ~ 14068463 (+) True G254653
TU301817 lncRNA downstream 610498 14443189 ~ 14477709 (+) True G254967
TU301818 lncRNA downstream 639980 14472671 ~ 14477709 (+) False G254967
XM_034311877.1 mRNA upstream 205823 13590465 ~ 13621861 (+) True cables2b
XM_034311876.1 mRNA upstream 205823 13590465 ~ 13621861 (+) False cables2b
XM_026920625.2 mRNA upstream 239943 13574516 ~ 13587741 (+) True ccm2l
XM_026920626.2 mRNA upstream 239943 13574533 ~ 13587741 (+) False ccm2l
XM_026920323.2 mRNA upstream 256383 13509588 ~ 13571301 (+) True xkr7
XM_034312171.1 mRNA downstream 229017 14061708 ~ 14067419 (+) False snx21
XM_034312168.1 mRNA downstream 229739 14062430 ~ 14067419 (+) True snx21
XM_034312169.1 mRNA downstream 229739 14062430 ~ 14067419 (+) False snx21
XM_034312170.1 mRNA downstream 229739 14062430 ~ 14067419 (+) False snx21
XM_034312167.1 mRNA downstream 229740 14062431 ~ 14067419 (+) False snx21
XR_003403145.2 other upstream 976689 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1443110 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1684157 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1706312 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 1927320 11892150 ~ 11900364 (+) False G253367
XR_004579688.1 other downstream 237537 14070228 ~ 14072158 (+) False wfdc2
TU301462 other downstream 237578 14070269 ~ 14072216 (+) True wfdc2
TU301463 other downstream 237578 14070269 ~ 14072216 (+) False wfdc2
TU301848 other downstream 837113 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 837113 14669804 ~ 14673952 (+) False G254991

Expression Profile