RNA id: TU301398


Basic Information

Item Value
RNA id TU301398
length 3804
lncRNA type intronic
GC content 0.39
exon number 2
gene id G254600
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13692797 ~ 13696620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaacccacgcTTCCTAAGCACGCTGTTTTTCATGAGCTAATACAATAGTGTACTAGCGTAGTACAGCTGTGGTTATGGTCAACATCAAGCAGGAGCTGGAAGATTCCCCATAATCCTTAAGGTCTGGTGTATATGAGCACCTCAGCTACACGTCCACACATCTGCATCGCTTAGCAGAACTCGACGAAACCAtgaagcaacacacacacacatttcttttgcCTCACCGATTCAATCCAGGTTAAAGAGACTGGAGTCTGATGGAGAACGCAGGAGTCAGAACTATGTCTAAGGCTCCAGAAAGCACTGATTTTTTCCGACAGCAAACCTAGCAAACAGCAACAgcagaatgtgaaataaaagccCCGTGCTTCAGACACATCCCCAGAGAAAGCTTGGCCAGAGAGCTAATGTTTCATTCACCATGATTCAATGATTTTCCTTTTATAACATCAGATGTTTTAATgaactgaagatgaaaagctaaggcacatattcaggCAATGCGTATTTTTCCTGTATCGAAAAcatatcgtttttttttttttttttttctaaaatcttATTGTGTCATTTTGTTACATTCCTTGAAGcttcatttctgtgctttcttgTTGTCAGTGAGTAAATAGCCTGGAccatcagattattataaacatgcatttccACTGTATACAgtcaaataaagtttattaaccCAAAGATATAAGCTTAGTGCACGCAAGCCAAGACAGATTGAGCCCAGCGCCTGGGGAATTAAGATTTATTATTTGGTCTGTTGAGAATTCAAACTGTGAATATGAACAAAATCTCTCCAGCAGGAATGTATTATAAGGTGAAAGGAATTTAACCAAGGCAGAAGCGGCGAATGGAAAAGAGGAATCGCGCTTTAAATCAGCGTCTACTCTTTGAGCTCGAGTTTAACGCTTCATGAATGGTTTGCAAGCTACTGCTCTATTAATGTGGCTTTTAATCGTTGGGACCAGTCGCGCTCTTAGTGCAGGTTATAGTGATAAATGGAAGAAGCATACGGTGTTTGCGAGCACGGAGACACACGCCATCCTGTGCTGCTAACACTGCCGCTAACCCACTTTCCTTAAATACTAGCTGGAAAACTATAAAGCAGCAGCAGTGCTGTATGATCCGCGACAGCGGCTTGCATATGGCTCATCTACAGCAGGACACACTCCGCTGTCATGTAGTCAGATGTGACGCCTGGGCTGAGGGGATAGAATTATCAAAATAACGAATGGTCGTAGCTTCATGTCCTTTGCTCACGCAGCCCTGTCTATTCGTATGATGCTCTGTGTTTTTTCATTTGCGTTAAGCATGTTTTGCCCTTCATTTCTCTTCAGAACGTCTCTTAGCTGTAGTGTAATTGAACAAGGGAAATAAAGATAATGACAGTCTTTAGCTGTTAATCTTTGAGAGGTCGGAGCAGTCATACCTTCTTTCTCTGTGCTCTCTAACGTTTAGCTGTTTCCTCTTGTCTTGCACCCACCACTTCAATTTGACTTAATTCAATTGTGTCGCAAAGTAGATTacatagacattgtcacaaagcagctttagagaaatccggatgtagctCTAATTtgcaagtggaaaaaaaaactctccctGACACGACAtaaagaagaaaccttgagaggaaccagactcagaaggaaaCCGAGTCTCTTCTgcgtgacaccggatagtgggattgTGATCATTAGAGTATACGCTGAACACGAGTGGTTCACGGCAAGAGATATTCTGgtaggtgagattatccactgcaGCAGGAAGGTTAAGCCTAAGCTGCATCCTCCGAAAGTTTTGCAAAGTTGAGATGAATTTCACACAAGGCCAGCTCACTAAGTCAGCTCCACTACTTCATCTTCTCTTTAGCACTAAGCCTGGTTTTCAGCTAAAGTGTTCTCAATGAGTTTCAGGCTGGATCATGATCCATGGTCTTATCACGATTATTTTTCAAGTTGGTAATTAAGGCTATTTTGCTGTTTAAGTTACTGAAGAGAGCAACCAAAATAGTTTCCTTAGTAGTGAAAATAAAGCTCTACAAGCAAACATAACCTCAGAGGAAAAGAATAACAGACACAACTTGAGCCAAAGTGCACTTCttacaaaaatgtaaacaattatttctaaaataaaagcaattaaGCATGGATagctgattaaaaatgttaaataaaacaatacatcaCCTTTACATTCATCTCTTTACATTCACCTTTATATCAGCTTTCTATGCAATAAATGTAAAGATGATTGACAGGCGTGTGAGTATGTGAATATGTTTAAATACTCGAATACATTAGCTGAGGTGGTTGGTGCGTGTCATTGTTTTGGTTTTCATTGCTCTTCTCGCTGCATTCTCTGTACttttgaactgaaaaaaaaaagtagtaacGAGGATCAACTATTTGCTTAAAGCCCTAGTTTTTGACCGGTTCAGTGGGTATTATCTGCTTGACCAGGTAAAATTCACAACATCAGTGATGTCTTTCCAGCACTTCCTTGTTTTCGTGGAAGTAGTGCTTTATTCAAACGCATTTGTCGTTTGTTTCTGCGCTGTGTCTGGACACTCAGATGCACTCTTTCACATGTCTTTTGGACATGTTTGCTGCATGTCCATTGTATAAAATCCACCAAATCCATATGactgatattgattttttttttttttaatgttgctaAACAAACTGAGGAGGAAGCGGAAGCTTAAGGAACTGCCAACTTTCGGTTGTTATTGGTTTGTTCATGGACTAGTGAATAGGATAATGTCTGGTTCATAAACAACTTGGCAACTGactaaatgtgtgtaatatcaTGGTGCTTCCGATCTGTCTGTAAAATCAGACTGTGGAGACATTTTGATCATTCACGATCTAAAATCATCAGATCACCCGTCCCTTTGTTCAGCAAATTTATAATTCACATAAAACCTGTTGGATAGAAAGCCACTCATGAGGTAATAAAACGTTCatgttattttctgtttgtcCTGTGTTTAAGcttactgcagctttaaaaggATTCGAGTGCTTTAGCCTGCAAAAGAGCTCAGGAAAGTGGAGCTACATTATAACAACTGCACCACACATTGCAGTATAACCCAAAATCTGGCTTTATTTTATCACTCACATCTGTGCGTTTAAAGTGCATGTTCAGGGTTGATCTGATTTGTTCATTAAATACGTATTGATATATCGCACAGATTAGTCCGGCTCACACGTATTCAAAACACAAGCTTGTAAATCACTGGTGGACGCATCTTTAgtccaggacaagcagattacatgtctgggctatgaaTGTTCTCGTTGTAGTTGCCTGGAGGACAAGCAAGTTCTGCTGACTGCTGATTTATTTCCTACCAGCGTTCTCTCTTCCaccagttaaaaaaacaaaaataaccaaaacaGTGGTTCGTACgtgatgtgtgtatttaaacATAACATGCTCCAGTTGGTTTATATATTTCATGCATTACCTGCATGCGCTTCTCATTCCCAAATCCTGCCACCTGCTAAACTACACACAGCAACCCAAGATACATTCTGAccataagaaatattttaaataatttaatgcatttgttAAGTACATATGAAAAACACtcgtgttttttttattatttaatgaatcAGCATCACACAGATATGTGGAAACAGTGTCTAGTTATTTTGTGTAACAGAAATACGTATAAAATAAGCTAAATATGAATGCTGGGTAGTAGGTGTtcattaatttcctataacagcagctctgaacgtagtgccagctgcaaggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301397 lncRNA downstream 27324 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 78134 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 101827 13590500 ~ 13590970 (-) True G254568
TU301036 lncRNA downstream 204304 13428290 ~ 13488493 (-) True G254270
XR_004579752.1 lncRNA downstream 227582 13464191 ~ 13465215 (-) True LOC117599295
TU301364 lncRNA upstream 3389 13700009 ~ 13700405 (-) True G254567
TU301888 lncRNA upstream 834205 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 1003604 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 1003604 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 1179024 14875644 ~ 14878506 (-) True G255306
XM_026920608.2 mRNA downstream 36123 13635812 ~ 13656674 (-) True ndrg3b
XM_026920610.2 mRNA downstream 36124 13635812 ~ 13656673 (-) False ndrg3b
XM_026920173.2 mRNA downstream 60776 13625898 ~ 13632021 (-) False sla2
XM_026920172.2 mRNA downstream 60776 13625898 ~ 13632021 (-) True sla2
XM_026921347.2 mRNA downstream 241423 13440784 ~ 13451374 (-) True tcea2
XM_026921355.2 mRNA upstream 3816 13700436 ~ 13721730 (-) False phf20b
XM_026921354.2 mRNA upstream 3816 13700436 ~ 13721730 (-) False phf20b
XM_026921353.2 mRNA upstream 3816 13700436 ~ 13721730 (-) False phf20b
XM_026921352.2 mRNA upstream 3816 13700436 ~ 13721730 (-) True phf20b
XM_034311623.1 mRNA upstream 3816 13700436 ~ 13718547 (-) False phf20b
TU300417 other downstream 1533437 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1551624 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1799795 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1800377 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2124267 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 432596 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 432596 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 432596 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 432596 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1002652 14699272 ~ 14704270 (-) False G255071

Expression Profile