RNA id: XR_004579688.1


Basic Information

Item Value
RNA id XR_004579688.1
length 663
RNA type misc_RNA
GC content 0.47
exon number 4
gene id wfdc2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14070228 ~ 14072216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTCATTTCCACCCTCAGTCCATTCCCCTTATCCATTCTGTCCTAGTTAGAGTGTTTTCCTCTCGAGTTCAGTCCTGTAGCAGAGTGCAGGGGAAGATGAAGCTAAAGCTCCTCTGTCTGTTTACTCTTGTGCTCTTAACCCTGACTGAATGGCCAAACCTGAGCGAAGGGGCCGCAGCTCGTAACTGCACAGTTAAGCCAGGAATCTGTCCTCGCCGGAAGTGGGGTTCAGGAATGTGTGCTGAATACTGCACTAAAGACGGCGACTGTCCCAACAAGGAGAAATGCTGCTATAACGGCTGTGGCCACGAGTGCATCACCCCTTACACAGtgaagcatggtcgATGCCCCATGCCTAAGGGGACCCCGATGTGTGCGGAGTATTGCTATCATGATGGTGAGTGTCCCGGAGAGGAGAAGTGCTGCAGGACCACATGTGGCCACGCCTGCAGTGAACCCTGCTAGTTAGATCTGGTACATGGACAGACATTTAGACCAATAAAGAGCAACCCTCTTATGGGAGATCTACCCTTCTATTCTAAATCATTTTTATTCTGTACCCATGAATTCAATGGAATATTTTTCTccattgattttgtgtgtgtgtgtgtttgtttatgtttgtaatGTCATTATTAAAACCCATTGTATCTTTTGGtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301465 lncRNA upstream 1765 14068259 ~ 14068463 (+) True G254653
TU301453 lncRNA upstream 14266 14055216 ~ 14055962 (+) True G254644
TU301436 lncRNA upstream 37895 14032116 ~ 14032333 (+) True G254633
TU301262 lncRNA upstream 237537 13827684 ~ 13832691 (+) True G254472
XR_003403196.2 lncRNA upstream 342846 13723365 ~ 13727382 (+) True LOC113530938
TU301817 lncRNA downstream 371031 14443189 ~ 14477709 (+) True G254967
TU301818 lncRNA downstream 400513 14472671 ~ 14477709 (+) False G254967
TU301815 lncRNA downstream 534921 14607079 ~ 14615274 (+) True G254966
TU301850 lncRNA downstream 550159 14622317 ~ 14673952 (+) False G254991
TU301852 lncRNA downstream 597646 14669804 ~ 14673952 (+) True G254991
XM_034312171.1 mRNA upstream 2809 14061708 ~ 14067419 (+) False snx21
XM_034312168.1 mRNA upstream 2809 14062430 ~ 14067419 (+) True snx21
XM_034312169.1 mRNA upstream 2809 14062430 ~ 14067419 (+) False snx21
XM_034312170.1 mRNA upstream 2809 14062430 ~ 14067419 (+) False snx21
XM_034312167.1 mRNA upstream 2809 14062431 ~ 14067419 (+) False snx21
XM_026920384.2 mRNA downstream 14917 14087075 ~ 14120704 (+) True phactr3a
XM_026920146.2 mRNA downstream 85016 14157174 ~ 14161605 (+) True fam217b
XM_034312076.1 mRNA downstream 132688 14204846 ~ 14258779 (+) False si:dkey-178k16.1
XM_034312072.1 mRNA downstream 132691 14204849 ~ 14264181 (+) True si:dkey-178k16.1
XM_034312074.1 mRNA downstream 132691 14204849 ~ 14264181 (+) False si:dkey-178k16.1
XR_003403145.2 other upstream 1219233 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1685654 12366743 ~ 12384574 (+) False LOC113530266
TU300294 other upstream 1926701 12141487 ~ 12143527 (+) False ppdpfb
XR_003403157.2 other upstream 1948856 12113622 ~ 12121372 (+) True trim101
TU299947 other upstream 2169864 11892150 ~ 11900364 (+) False G253367
TU301848 other downstream 597646 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 597646 14669804 ~ 14673952 (+) False G254991
TU302131 other downstream 1044954 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 1044954 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 2138492 16210650 ~ 16229406 (+) False LOC113530889

Expression Profile