RNA id: TU302078


Basic Information

Item Value
RNA id TU302078
length 416
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G255189
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14878912 ~ 14879327 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCTACATTGTAGATATTAACCAGGTAAGTGTGTGGTACAAATGCAAAAAGAATTGGTTGACCTAATCTGATGCTGTTCTTAAAGAAAACTATCCCATGGTGTAACTCACTGTGTTGTAAGAAATGTAAACAATATagtgcatttaataaaatactaataataagaAAGTGTAACTGCAGTTCTAATGACACTTTTGCATTTAGTTCACAGGAACAGCTTCTTTCTTGCAATGcttccaaacagcttgttgatTTTGAAACAGGACAACCACAAGAATAAAGTAAACTGGAATTCTAACACTGCAATCCTTGGGCTCTCTTTTCCCGCCTTCGATATCCCCCTCTCTGTGGGGAGACAGAGTGCTCAGGGTCTGATTCCTGGCAAATTTCCaacatgtgaaaatgtcttATAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301929 lncRNA upstream 172391 14705697 ~ 14706521 (+) True G255058
TU301928 lncRNA upstream 173376 14705268 ~ 14705536 (+) True G255057
TU301850 lncRNA upstream 204960 14622317 ~ 14673952 (+) False G254991
TU301852 lncRNA upstream 204960 14669804 ~ 14673952 (+) True G254991
TU301853 lncRNA upstream 204960 14669804 ~ 14673952 (+) False G254991
TU302114 lncRNA downstream 117498 14996825 ~ 15002630 (+) True G255209
TU302099 lncRNA downstream 174782 15054109 ~ 15054471 (+) True G255198
TU302123 lncRNA downstream 214486 15093813 ~ 15095619 (+) True G255218
XR_004579741.1 lncRNA downstream 296257 15175584 ~ 15177222 (+) True LOC117599280
TU302136 lncRNA downstream 350406 15229733 ~ 15239236 (+) True G255229
XM_026920805.2 mRNA upstream 2009 14868292 ~ 14876903 (+) True mapre1b
XM_026920153.2 mRNA upstream 14260 14848555 ~ 14864652 (+) False prkcbp1l
XM_026920156.2 mRNA upstream 14260 14848555 ~ 14864652 (+) False prkcbp1l
XM_026920151.2 mRNA upstream 14260 14849116 ~ 14864652 (+) False prkcbp1l
XM_034311720.1 mRNA upstream 14260 14849116 ~ 14864652 (+) False prkcbp1l
XM_034311944.1 mRNA downstream 20303 14899630 ~ 14972991 (+) True lama5
XM_034311945.1 mRNA downstream 20303 14899630 ~ 14972991 (+) False lama5
XM_026920486.2 mRNA downstream 128794 15008121 ~ 15052391 (+) True soga1
XM_026920484.2 mRNA downstream 128800 15008127 ~ 15052391 (+) False soga1
XM_026920485.2 mRNA downstream 128800 15008127 ~ 15052391 (+) False soga1
TU301848 other upstream 204960 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 204960 14669804 ~ 14673952 (+) False G254991
TU301462 other upstream 806696 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 806696 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 806754 14070228 ~ 14072158 (+) False wfdc2
TU302131 other downstream 237785 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 237785 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1331323 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 1484222 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 1493915 16373242 ~ 16396212 (+) False LOC113530371

Expression Profile