RNA id: TU302123


Basic Information

Item Value
RNA id TU302123
length 1640
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G255218
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15093813 ~ 15095619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTTATTTCACTCAAACCAGTGTACACTTGAGCCATAATTTTATTAGCTTTCAAAATATgttgattaaaatatattgttcaGAACAGAAAAAGGGGATTATAGACAATTACAAGataaaaagaacattaaagttttttttttctggtaagagagagaaaagtgagaCCATTAATGGGGACTCCAGGATGTAAATAACATTCCTAAAACTCGTCACGATAACCAATCCTGAGCTAAATAAAGATTAAAGGAAATGTAGCAGAACAACTGCCACTTGATCAACATTCAGAACTGACTttcatttgaaaatgtaataatttcagCTGAATCCTGAAAAATACCTCAAGATCAGAGTGTCTGACAGTGGATCCAAGTCACATCATCAAGTCCCAGCTTAACATCATAACCTCACTGTCTAGACTTGGTGTGTATTTAACATTCTGGCATATTTACAAACTGGCATCTTATCCAAGTTGCTCCATTGATAACACAGACCCTTCCTTGTGTAGGAAAAGGAAATTATGGAATGACTGGATGGGTCTGTAGAGGAACACAATTCCCAAAACAATCAATCACTACTGAATGATCCAGTAGTGAAAACGTATTTATTGGATCACAGCATTTtggtattaaatatttttgtccttttctcaGTTCAGTTTAAAGAGAACCATGTCCTCCCTCTTTTAAACAGACAAGTACAAGCTTATGCTACAAAATATGTAGATCACTGCAAATATTTATACAGTTTTCATGCAATATATTGGGGAATTTTGTACCTACTGATCATAACCTAAAGCAGAGATAATCTACAATGTGTATACAGATTGTTTCTTGAGACATGTTTAAATCCTACCAACATCTTAACTTAGAAGTCCGAGATTAACATTTGCTACATTAGTCTTGCAATAAGAAGAGACTGTTAGCTCTTACATGTAAAACCACATGAGTCTTTTTGGGATCAATCACATGATTTTCAACGTTGGCACATGAAAATTATTTCTGTCATATAAAAACTACCTATGATtgagtaaattaaataaaaagtactcAAATCCTGTATGTGCGtgaaatatctgaaaaatacagagatttattttttttccttcaaaaaaCAATCatctacagagaaaaaaaaaggttataacTAACCAATactaaacaaatatacaaacgAGTCCAGTAAAATCTCCCTCCAAATCTTTTTAGTTCCTTGAGATTGTAAAACTGCAGGACATTTTATACATCTTTTTCTCTGGTGACTTTCCACAAAGATTgctatacatttcattttacccATATGCCCTTCTTTAAAATTGAACCCCTACTGGGCCGAAGTGAAGTGGTTTTAATAGTGTCTACTAATGTTCACACAGCAGTACAGCAGCGGTTCTCAAACAGCTGCTCAATAACTGAACTGTCCGCTAGCGTGGACACGTCTCCTAAATCCTGCTGGTTAGATGCTATCTTCCGTAGCACACGCCGCATGATTTTACTGATCTGGTTTTGGGAAGCCCAGGTGCATTCTGTATGTAGTCAGGTGTAGCTATGGCACCAatcttctctctcactgtttttttcagAACATAAAATAGGGTCATACCATGTCAATTCAACCAAACGTTGGTTGCATCAATGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302099 lncRNA upstream 39342 15054109 ~ 15054471 (+) True G255198
TU302114 lncRNA upstream 91183 14996825 ~ 15002630 (+) True G255209
TU302078 lncRNA upstream 214486 14878912 ~ 14879327 (+) True G255189
TU301929 lncRNA upstream 387292 14705697 ~ 14706521 (+) True G255058
TU301928 lncRNA upstream 388277 14705268 ~ 14705536 (+) True G255057
XR_004579741.1 lncRNA downstream 79965 15175584 ~ 15177222 (+) True LOC117599280
TU302136 lncRNA downstream 134114 15229733 ~ 15239236 (+) True G255229
TU302134 lncRNA downstream 152078 15247697 ~ 15257735 (+) True G255227
TU302439 lncRNA downstream 359336 15454955 ~ 15455317 (+) True G255507
TU302592 lncRNA downstream 516306 15611925 ~ 15623220 (+) True G255645
XM_026920486.2 mRNA upstream 41422 15008121 ~ 15052391 (+) True soga1
XM_026920484.2 mRNA upstream 41422 15008127 ~ 15052391 (+) False soga1
XM_026920485.2 mRNA upstream 41422 15008127 ~ 15052391 (+) False soga1
XM_034311944.1 mRNA upstream 120822 14899630 ~ 14972991 (+) True lama5
XM_034311616.1 mRNA downstream 21451 15117070 ~ 15119993 (+) False rps21
XM_026920119.2 mRNA downstream 21451 15117070 ~ 15119056 (+) False rps21
XM_026920714.2 mRNA downstream 268537 15364156 ~ 15391163 (+) True ddx23
XM_026920177.2 mRNA downstream 304187 15399806 ~ 15405647 (+) False naa10
XM_026920175.2 mRNA downstream 305269 15400888 ~ 15405647 (+) True naa10
TU301848 other upstream 419861 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 419861 14669804 ~ 14673952 (+) False G254991
TU301462 other upstream 1021597 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 1021597 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 1021655 14070228 ~ 14072158 (+) False wfdc2
TU302131 other downstream 21493 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 21493 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1115031 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 1267930 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 1277623 16373242 ~ 16396212 (+) False LOC113530371

Expression Profile