RNA id: XM_026921087.2


Basic Information

Item Value
RNA id XM_026921087.2
length 2814
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC113530775
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15258485 ~ 15317365 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGACTGAAGAGGAAGGCGAACGGATGCACTCCATCACATCATGCAAGACGCAACCTCTGTATAGGAGGCGCTGCGTGAGCACTTAACGTGTGATGGATTTAGCGCGTAATGACAGGAAGACACTAGAAATCTGAAAGAGACTGTGCTTTTTTGCACGTTTTTGCAGAAGCAGAAAGGTCCGAGGAGAAGAAGTGGTTAACATGAAGAGCTCAGTGGTGGTGGCGTCTCCGAAGCGTGCGAATGACCAATTCCTGGTGAGAGAACATTGCCTGCCTTCTTTGGGAAACGACCTTGTAAGCACTTGAGGCCATCCACCCTCTTTATCTATATCTTTCATTCACTATATTTATGGTTCACAAGACTGCTTGCAGTGTGTAGAAGTTGTATATGTTCCTTTTGGTCCTCCATGGATATTTTGGCCCTCCCTTATGGTAAAATGCTGGTTCTGGGGGCCATCTCTGCTGCCTCAGCCTTCGTTGTCACCATCCTCattgtgctggtgtgtgtggggtgtcACACgaaaagcaaaagtaaacacAGTCATGCCAGTGTGGGGAGTCAAAAGAGGGACATGggTGTTCTTCATCAGTCCAAGCTGAGCTCCATGAGTAAATCTGACACAAGACTGCATGAGATGCACCGACTGCCCTGCCGTGCAAATGGTGCCCCTAAGGATCGGCCAGCCAGCATGGACCTACTGTTGCTGCAAAGTCACCGCTCAGTCTCTGACCTCCACCCTCTAACCTCTAGCTGCCAGCTGCCCCGCATCCCCACTGGCCCTGAGAGTGAGGAGCGTGAACATCTCTACCCAGATGACGAAGGACTATATGAAAGAGTTGGCGTGTGGAGAGCTCCTCCCCCAGCTCCAGTTCTGAATTCAATACAAAGCCAAGCAATTACTGAGAACATACaaggagcaggaggagaagTGGAGAGTAGAGGGCTGAATGAGGCAGGGCAAGCAGACGTGATGGCCGAGTATGCCTGTGTGAGGAAGGTGAAAAAGCTGGACAGAGAGATGAGGCAGGAAGGATCAGAGGAGGAAAATACATCAGAGTCATCCAACAGCGCTGTTGACAGAAAAATCATGGAGCCTTTCCACATACCCAGCTTCCCCAAGGGGAGAGTGTCCATGGGTAATGGAGAGGAGTACATATGGAAGCCTCCGGAAGAAAGCAACATTCACTCGTTGAGGGATCCAGCACTGGAGAATGGCCACAGCAATGCCAGCACCACCGAGATCTTTGAGACATACTCCACCATCTGTAAACCCCTGAAGAAAGAACATCTGGGGTCAGCACAGCAGATCAGTGGGCAAGTAGGCTCTGGAGAGAAGGGCTCTAATGGACCTGTATCATGGCCGTCAGGGGAGCACTGCTATGAGGCAGTGGGAGAGAAAACTTGGCCTAAGGTGCTAGATTCTGACCCGGCCTATGCCACTGTCAACCCCAtgcaaaagagagaaatgcTGTGCAGCAGCACATTAACGCCAAAGAAGTGTTGTGGGCCTCCGCAGGGACCAGAGACGGCCATGACCTGCGAGAACTTTTATGAGAGCATTGGGGACGTGAAGCAGGGTACcaacaccaccagcaccaccaccatCTTCACCTTTAATGATGGCATGGAGATGTACGTCACAGGGCTGTAGAGATCTTGGTTGGGTGCATGTGAATTCAAAAGAAGTCTGAAAAATAGACTAGAATGTGAGACGTcaacatacatgcatacacaaatTTTGGTGTAAAGCAGTGGAGATCAATATACACCTGTCTGTAATGTACCTGTGATAAGCACATATGTATGAATACAATGTGTACTTGAGACgagatattatatttttgttgcGAACACAGACGAATGAGCACATACCATAGACTTTTTTCAGACTAATAGAGTCAACCTTTACAGCTCCAAAAGGTCTCTGAGAGGCAAAGCATCAAATCTGGCTTCTCTGCTGTGATACAATCTCTACTGAAAGCATTGGGGTAATGCATGGCCTCGTCAAGACCTCAGCAGATCTGTCTTTAAAATTATTCTTCTTTAGTCTCACCCATTTGCACCAGTGCAGaagattttgtttattaaagggTATTTATGTTATGTGTGGAATTTTAGATGGTATAGATagctgtgcatgtttctgttggTGATATTGTACCTCTGGGCAGACTTAAAAGCCATAAAGGAAATAATTCTTGAATACTACAgcagtttttgtttcttttttttttttttttttttttttttttttaaataacatggcATATATCCTCCACCCATTTTTTGGCAGCCAGAAAACCTAGAACAGTTGAACAGTTGACAGCATGGTTTTCCCCCACAGAGAAAGAGTCAGTCTCCTTTTTAATGTCCCAGTCTGGACACTCATTAATTTCCTAGAAAAGAGGCAAAGGTTTTTCTAGGAAATagagatgaggaaaaaaaaagagcactttGTTAACAAAGCAAGGCTCAACACATGAAGTTAACGGTGTTATTTCTTTGTGGTATTGTAGACATTTGGGTTTATGGGGCGTGTAGTACTGGCATGCAGGAGCACTGTGGTCAGATTGGCTTGTGCAGGGCTGAAGTCTGTAATGGCTATGTATCTCGCAGGGTCCACATTCTGTCCTCAGGTGCCAGATCTGGACAATGGCCTCTGGTTTTTTTGGCTGTTGGCTGGCCTAAACAGCACTGCTTAACACAGGATAAGGTAAACCTAGCACCAGCTCTGGTCACTACCAAGAATCTTTCAGAAGGAAGCCTCCTGCTGTAGGCTTTCTGCATGTTACAGTACAATCCACCAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302304 lncRNA downstream 31625 15182157 ~ 15227960 (-) False G255385
TU302303 lncRNA downstream 73613 15182157 ~ 15185972 (-) True G255385
TU302322 lncRNA downstream 78945 15180386 ~ 15180640 (-) True G255403
TU302215 lncRNA downstream 381079 14875644 ~ 14878506 (-) True G255306
TU301947 lncRNA downstream 555315 14700224 ~ 14704270 (-) True G255071
TU302361 lncRNA upstream 14761 15332126 ~ 15332451 (-) True G255435
TU302438 lncRNA upstream 136768 15454133 ~ 15454354 (-) True G255506
TU302664 lncRNA upstream 335482 15652847 ~ 15657703 (-) True G255693
TU302681 lncRNA upstream 426375 15743740 ~ 15820154 (-) False znf512b
TU302675 lncRNA upstream 490338 15807703 ~ 15820154 (-) False znf512b
XM_026920086.2 mRNA downstream 1834 15187398 ~ 15257751 (-) False si:rp71-79p20.2
XM_026920085.2 mRNA downstream 1834 15187398 ~ 15257751 (-) True si:rp71-79p20.2
XM_026920555.2 mRNA downstream 118606 15125347 ~ 15140979 (-) True gss
XM_026920116.2 mRNA downstream 142959 15093797 ~ 15116626 (-) False acss2
XM_026921243.2 mRNA upstream 22631 15339996 ~ 15357857 (-) True birc7
XM_026921257.2 mRNA upstream 94805 15412170 ~ 15451350 (-) False lmod3
XM_026921256.2 mRNA upstream 94805 15412170 ~ 15451350 (-) False lmod3
XM_034312173.1 mRNA upstream 95453 15412818 ~ 15451350 (-) False lmod3
XM_026921258.2 mRNA upstream 108147 15425512 ~ 15451350 (-) False lmod3
TU301948 other downstream 555315 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 1109004 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 170392 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 397670 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1330458 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1496019 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2359200 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile