RNA id: XM_034312237.1


Basic Information

Item Value
RNA id XM_034312237.1
length 3757
RNA type mRNA
GC content 0.45
exon number 12
gene id znf512b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15658336 ~ 15820241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCATCGCTTTAACGTATTTAACCCTCGCTAGCACTCACGCAGATGCAGAACATTACCGGAATAAAACCTCTTTTTATGTTTGCCTTTCGCTACAGCGcgagctttttttcccctttactcATCCGACGTATTCGCCATTTTGCTTCACTGCCTATAAAAGCTTTATGCATTGTAATATTTTCCCTGAAGTGTAAGAGACGTCTGTTGATCTGCTTGTCGTTTTTTCACCCGTCTTAAATTCGGTTTTTAAAAGGGGAGGGGGGTGTTAAGCGGGGTTAACATGTTTCTTTTAACATGTTAAGAGAAACGTAGGGTGGCCCATAAGCTGAATGCGTTCTGGTCGGTTAACTTGCGTTTGCTTTTCCGCCTCTCCCTCCTTATTCTTCATCCCTGCTGCTCATTCTTTTATTCCTCGTTACTGGACTGGGGCTAGCTAGCCGCACAAGACCAACGGAAAACTCATGTGCGACTGCCATGGTAACCCAGACAGGAAACGCGTGACCCCCGCCcccttacttacttacttacttatacacacacacacacacacacacagcgcgtGCAAGGTGATAGGGATCACAAGCTTTCTTAACACGCTGGTGAAATGAAACATATAcaattaacataaatatataaattgcaGGATAAAGAGGCTTTCAAAAAGGAAAGCAAGGTAAATCATGTCATATCTTGTTCCACctataatgtgatatagcaaccaacaaagtgaaaaacaaatagaaacgctttaggaaaaaaaagaagaaaattgacaataacctggttgcataagtgtgcacactgtGTAAACAGCCAAAATTACTGCTGAGTACCTTTAAGAAGTGCTTATGTCATATACGTAATGTATTGTGTATGACGTCGCCTGCAGACGATGATATATGACGGGAATAGGGCAACACAGATGAAAACACTGGATCCAGCTCTGTTATACCTGGTCGATGTAGCTAATAAACAAACCATTTGGAATACTGTCAGTCAAGTGTGCCCAGCTTGTTCTCATCCACCATGTGCTACGTACTTAACTTGGCCCCCCAAGGCCTGACACTGTCCAGGTCTAAGCATGTTTAGCACCAAAGCTGCATTACAGTTGGTGCCCAAACATTTGTGTACCAGTCTCATTTGTGGAGTTAGAAAATGtgcccaatttttttttttttaattgtccaATCTGCCGCATCACCGTTGGCTCCCTGCCATTGACCTTAACTTTTATGAACCAAAGTGGAATTGGACCCATGCGGGAACTaactttttgttttctattgactgggttttttttgtgtgaagcTGAAAATTGCAGCAGATTTAGGGCCGGACTGAACACTCCAATGCATTTGTGGATAAACTGAACTTCTCATCGGATTTGCAGATGAAACAGAATGGACATCTGAGCAAAAAGAATGGACTCTGTGTGGCGATTGCGAATGATCAGAATTCTCGATCGAGCTTGTGGATTAACTGAATAGCAGCAGCCTTGGGGTTAAACTGAATTTTTCTCTGGATTATCAGGTGACCTGAACAGCACATTACAGTATGCAGGATTCACAGGACTTAAAAAAAGGTCCCTCCTGCAATGAGAGAACAGACAACAAGAAGAAAGGGCACTGCCATGTGGAGGTGCCGGACCTTTGCACAATCCCTGAAACTGCGGCAGAGAAGTTCAGTTATGGCTGTCCATACTGCGAGGCTGTGTTTGCCACAAAAGTGCACCTGCAGCAGCACAAGCTGTGGAATCATTCAGAGAGGGTCAACATGGAGAGCAAGATAGCAGTGACCCTGGAGCCAGTGGCTGAGCTGAAAGCCAAGtccaaactgcaaaaaaaacctgtaaaggAAAATTCCAGAAAGAGAATGTGCGGCCCTTGTCTCAGGCCTATGGAGAACAGCCCCTCCTCGCCAGTCTTTTTAAAGGTAAAGAAGACCCAGGAAACGTCCCAGCCCTCACGGAATGGCGAGTGCACTGATCAGAGGACagagaaaaaacaacagcacagCTCCCAGCAGCATAAAGAAAAGGGAATTCTCTTGGATGCTGGGGGCAGTGAAAGCGAGGGAAGCAGTCTACCTCCAACTTTTCCTGAGGAAGACCCAGAAAGGATGAAACATAAGCTAGGGAGGAAACAGAAAACTCCAAAGAAGTTCACTGGGGAGCAGCCCTCCATCTCTGGAACATTTGGCCTGAAAGGGATGAATAAGGTGGATGAAAAGCTGAAGATTGGTAGAACAAAGCGACCAGAGGGGCCACCATTCAATGAGGGGTCCCAGAAGAAACAACTGACCCTGATTCCAGCCAAAAGGGAACCACCCTGCCATAGTCAAGCACCAGCTCTTGATTCTGAGGCGCAGGATGCCATTTTGGAGCACAGTGAGGTGTCCTGCTCCACTTGCTCCATTGTCACCTACAAGATTTGTCCTGGCTTCAAAAAGCACTTGAAGATCTGTCAAAAGGCCCCCATCAGTGAAGAAAGTGAGTTGGATTGTgtgaaggaggaagaaaaagagcagtCTCCCACTGACAAGACAAAATCAGATCTAGCccatatgaaaataaagaaaagaagagaagagaagatggaGAATAAAAAGGATGCCAGTGTGGAGGCCGAGGAGGAGTTGTTGGACCTAGAGCGCACTCCCAGTGGCCGGGTGAGGAGGCGCTCAGCCCAGGTAGCTGTATTCCACCTGCAAGAGATTGCAGAGGATGAACTGGCCAAGGACTGGGGAACCAAACGCCGCATCAAAGATGACCTTGTCCCCGACATTaagaggCTGAATTACACACGACCAGGCCTTCCCACCTATAACCCTGAAACCCTGGATACTTGGAAAAATGAAGTAAAGGAGAAAGGTTTCATCTGTTGTCCCAATAGTAGCTGTGAGGCCATTTATTCAAGTGTATCAGGACTCAAAGCTCACCTTACCAGCTGCATCAAGGGAGGGGTCATTGTGGGGAAGTATACATGCTTACTGTGCCAGAAGGAATTCAGCTCTGAGAGTGGGGTGAAATACCACATTTGTAAGACACACTCTCAGACTAGTGCACCAGTGTCAGCTGCTCTCACCTCCTCTTTCTGCACACCCTGCTGTCCCCTCATTTTAATTCAGAATTGGTTTCGAGCAACAGGCCACGTGTCTAACAGCAAGAACAAAGATTCACAGAGCAACAACCTGCAGAAAGACATGAAAAATGGAGTGCCCTGGAAGAAAAGGGGTCGGAAACCCAAAGAACGTCTGGCTGAAACAGCATCCACCCGAGAAAAGACTCTGAGTAGTAGCAATGGACCTTCCATGAATCACCAGACCCCACATCCAAACACAAGCCCAACACCAATACAAACATCAAGCCAGAACCCAGCCTGCACCACCCCTAACAATATCCCAACACCAACAGATGATATAAATCTAACCCACAATAGAGATTTGCAGCCTCCTGTTAAGAAGAGAGGCAAGCCTAAGAAAGCACCACTCACAGAGTAACATGGCTTTCACCACTTCAGTACCAGACAGGATGCTGTTAGCAATACgccagtaaacaaacaaaacaatacttCATCTGTAAGTCATCACCCCTGcaattaaatattacacagaAAATGGAGCTGATACAGAATAACACATGGTGGAGCAGATGAGAAAGTGTCAACAATTAGCTCTTgcattagtttatttttaaacccgatatatacataaaactgaaaatattggaatggcaaggacaattcttttgtttttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302664 lncRNA downstream 633 15652847 ~ 15657703 (-) True G255693
TU302438 lncRNA downstream 203982 15454133 ~ 15454354 (-) True G255506
TU302361 lncRNA downstream 325885 15332126 ~ 15332451 (-) True G255435
TU302326 lncRNA downstream 398231 15258485 ~ 15260105 (-) False LOC113530775
TU302304 lncRNA downstream 430376 15182157 ~ 15227960 (-) False G255385
TU302753 lncRNA upstream 23745 15843591 ~ 15849718 (-) True G255772
TU302767 lncRNA upstream 61445 15881291 ~ 15881909 (-) True G255781
TU302775 lncRNA upstream 64029 15883875 ~ 15890989 (-) True LOC113530984
XR_003403202.2 lncRNA upstream 64228 15884074 ~ 15890941 (-) False LOC113530984
TU302782 lncRNA upstream 73570 15893416 ~ 15894786 (-) True G255796
XM_026920630.2 mRNA downstream 5731 15608285 ~ 15652605 (-) False uckl1b
XM_034311972.1 mRNA downstream 14372 15610666 ~ 15643964 (-) False uckl1b
XM_026920627.2 mRNA downstream 14394 15608285 ~ 15643942 (-) True uckl1b
XM_026920629.2 mRNA downstream 14395 15608285 ~ 15643941 (-) False uckl1b
XM_026920631.2 mRNA downstream 28099 15608285 ~ 15630237 (-) False uckl1b
XM_026920856.2 mRNA upstream 754180 16574026 ~ 16587748 (-) True sars1
XM_034311723.1 mRNA upstream 821614 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA upstream 821614 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA upstream 821614 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA upstream 821614 16641460 ~ 16647419 (-) False si:ch211-207e14.4
XR_003403204.1 other downstream 170477 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 954066 14699272 ~ 14704270 (-) False G255071
XR_004579686.1 other downstream 1507755 14129216 ~ 14150581 (-) False LOC113530423
XR_003403156.2 other upstream 827977 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 993538 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 1856719 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 2073235 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 2465640 18285486 ~ 18300687 (-) False znf217

Expression Profile