RNA id: TU302775


Basic Information

Item Value
RNA id TU302775
length 953
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC113530984
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15883875 ~ 15890989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGGATCGCGGGAGAGAATGGTTTGCGCGCAGTGGTGAGAgcggagagggagagagagagagagagagagagatgatgacgCGCACTGTGTAATCGGATGTGGCTAATTCATGATGTTCACCTCCttatgtttaataaatcaaGTGTTATGATCTCCCGAGGTCCCTGTCGGTGTCCTCCTTGCAACAAAGCCAAGAACCCACGAGCCAGCGCGCGTTTTCGAGATATCGACAGCAAACCAACTCCACCCCGTCTGGTCTGATACGGAGAAGTATGCTGAGAGCCAGAGCCCCGGCCCCCATCATGTGCACCTTCTACAGAGGTACCATCGAGAGCATTCTGACGAgatgcatcactgtgtggtatggtGCCTGCAACGCGTCCTGCTGAAAGACCCTCCAACACATAGTGAGAGCAGCTGAGAAGATTgttggtgtctctctctctctcccttctgcATTGCGGGTGATCCCACCCACCCGACACACAGCTTCTGAAGGACAGCTTCATCCACCAGGCTGTCAGGAAGCTCAAATCTCTCCCGGCTCTGCCTCCCCTCCCCTCTTCTGCACCATACACTGACAAAACTCTGACCctccttttttttgtgtgtgtgttatctgtatgcacCTAGGGTCTGAGAGTAACGTAATTTtaattctctgtatgtgctgaacatgtggcagaattgacaataaagcagaCTTTGACTTTGAATAATAATAGTTTCTTATAAGCCTGTATACTCATAAATACTGTCAGGAGTCTATGCACGTTCGCTTCCGCATGTAGTCTCAGTGGGCATCGCAACTTCCGGTGCTGCGCCGGAAGCAATTTTTGCCATCCCTTTGAGTGATTGCTGTCAGCATGGCTTTCTACACTTGCTGTTTGCAAGATCTTCCATGAATTACAGTGAGCGATGTCAGTGGCATTGTGAGATTGGCATCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302767 lncRNA downstream 1966 15881291 ~ 15881909 (-) True G255781
TU302753 lncRNA downstream 34157 15843591 ~ 15849718 (-) True G255772
TU302681 lncRNA downstream 63721 15743740 ~ 15820154 (-) False znf512b
TU302675 lncRNA downstream 63721 15807703 ~ 15820154 (-) False znf512b
TU302664 lncRNA downstream 226172 15652847 ~ 15657703 (-) True G255693
TU302782 lncRNA upstream 2427 15893416 ~ 15894786 (-) True G255796
TU302824 lncRNA upstream 15115 15906104 ~ 15908318 (-) True G255837
TU302833 lncRNA upstream 56861 15947850 ~ 15948052 (-) True G255845
TU302834 lncRNA upstream 57250 15948239 ~ 15948629 (-) True G255846
TU302839 lncRNA upstream 60566 15951555 ~ 15951961 (-) True G255851
XM_026920962.2 mRNA downstream 63634 15658336 ~ 15820241 (-) False znf512b
XM_026920960.2 mRNA downstream 63634 15658336 ~ 15820241 (-) False znf512b
XM_026920961.2 mRNA downstream 63635 15658336 ~ 15820240 (-) False znf512b
XM_026920967.2 mRNA downstream 63635 15658784 ~ 15820240 (-) False znf512b
XM_026920969.2 mRNA downstream 63635 15659186 ~ 15820240 (-) False znf512b
XM_026920856.2 mRNA upstream 683037 16574026 ~ 16587748 (-) True sars1
XM_034311723.1 mRNA upstream 750471 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA upstream 750471 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA upstream 750471 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA upstream 750471 16641460 ~ 16647419 (-) False si:ch211-207e14.4
TU302676 other downstream 63721 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 396016 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 1179605 14699272 ~ 14704270 (-) False G255071
XR_004579684.1 other downstream 1733294 14129216 ~ 14150581 (-) True LOC113530423
XR_003403156.2 other upstream 756834 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 922395 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 1785576 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 2002092 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 2394497 18285486 ~ 18300687 (-) False znf217

Expression Profile