RNA id: TU302796


Basic Information

Item Value
RNA id TU302796
length 1755
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G255809
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16043155 ~ 16048021 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTGAAGTACAAATCTCCTGCCCACACATCTGTCTTTCCTTGAAACCCAGAGGTTCTGCACAAAGTTTGGGTCCTATGGTTTTGGCAATGATACAAATGAAAGTTCTAAGTGTGAGACTGATACAGGCACTTTTTGTACTCTAAGTGAGACACAATACTTGTTGCACGATATAAGAGGCGCACTCACATTGCATGATATAACAGTCGCACACACAGCCCACTGAACTTAGTGTAATACCAATATTGACATCTGCCCACCTCCTATGCTGTCTGTGCTTGACACTAAGTTGTGGGCTAAGCACATAGGTCTTGTTTCATCTGCTAAACCACATGCAGTCACACTTAAGCCTGGAGTCCTGCTGCCATACAAGAAACAATACTACTGAGCCCCATATGCTGTTGAAGGGATACAGCCAGTTATTTCCTCATTACAAGGCATCCTAATAGAGACAAAAATTCTCTGTTAATCAGATAATACTCCTATCATGCCCTTTGTACATGACACAAATATGATTCTTTTTCTATCCTAGTTACTGCTATGCATCTTACTGCTATGCATAAAAAGGCCTGTATTCTGCCTTTTTCTCAATTCTGGTGCATCCAGATAGTTAGATTCTGTTTGCTTTTACATATGATATTAAGCAATACACAAGACTGGCAGGGCTATACAGAGTCCAGCTGTTTATGCAGCCACTGTTAAAAGGGACTTAGAGGCTTTGGACATGTCTGACAGAACAGTTTTCGATCCAATATGCAGATGACATACTTCTACAAACAATGATGCATGTGTTACAGACTCATTGAAACTCCTCTCTGCATTAGCTGACAAAAGTCATCACACCTTTTTGGCCAAGTAGCAGTTTGCACAGCCTCAGGTACAATACTTAAGCCATATTCCTGTCAGAAGGGACAGCGATCCATCGCCCCAGAGTAAATGAAGGAGCTACAAAGCCTGCCTGTGCCTAAAACCAAGAAGGACATGATATCCTTTCTGGGTTTGGTAAATTACTGCTGTCACAGGATCCCTGACTTTGCTGTTCAAGCACTTAGAAAGACCAAGCACTGGTCAGATGCCATGCACACAGCCTTTTGCTCCTCATATCTGTTAATAATAAGGCTATGCCACGGGGGTGCTCACTCAGAAACACAGCACCCACATGAGACCTGTGGCCTACTACTCTTTGAAACTCAGCCCCGCAAGGTATGGATATTTTCTATCTTCTGGAGTGATTCTTTCTTCTCATATTACTGTACAGCATGCACAACCACTTAACCCTGCTACTCTTCTTCCAGTTtcagatgatgatgacgacaCACTGTTGCATGACTACTGTGCCTTGGTTCATGAGAACTACAGGTACTGATGGGGAGACCGGTGAACTTGTCATCTGCAGTGCATCAACTTCCACTGAGGAGAGGCTGACTTTACTgtaaaggagcagacctggagggttcacaggcatagagtgttgtggtgaactggaatgtttggatgctgttgtgCCCCCGCCCCCCCATTCTcatgcgttcactcagctacacatgctactcctgagataccagtgatcctgaccccttctgctctctggacctgcctgatccatcctgatgccctacttctggttggagttctcattggttggagatcgctcactgctgctgggggtggccccacatggacggcctgtaGATCATTGGCATTGCTGAGGATGGTGTCACTTAGGGGCCGTGGAGATGTACTGTGATgacttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302785 lncRNA upstream 93566 15949213 ~ 15949589 (+) True G255798
TU302766 lncRNA upstream 161290 15881386 ~ 15881865 (+) True G255780
XR_003403187.2 lncRNA upstream 217703 15823289 ~ 15825452 (+) True LOC113530859
TU302647 lncRNA upstream 217771 15823288 ~ 15825384 (+) False LOC113530859
TU302599 lncRNA upstream 385013 15657777 ~ 15658142 (+) True G255650
TU302797 lncRNA downstream 541 16048562 ~ 16052355 (+) True LOC117599274
XR_004579732.1 lncRNA downstream 1201 16049222 ~ 16052382 (+) False LOC117599274
TU302802 lncRNA downstream 130116 16178137 ~ 16181020 (+) True G255815
TU302907 lncRNA downstream 183992 16232013 ~ 16309562 (+) False spo11
TU302921 lncRNA downstream 269128 16317149 ~ 16318306 (+) False spo11
XM_034311950.1 mRNA upstream 8317 15999964 ~ 16034838 (+) False edem2
XM_026920739.2 mRNA upstream 8319 15976896 ~ 16034836 (+) True edem2
XM_034311949.1 mRNA upstream 8319 15976976 ~ 16034836 (+) False edem2
XM_026921436.2 mRNA upstream 100152 15895643 ~ 15943003 (+) True prpf6
XM_026920719.1 mRNA upstream 502425 15519342 ~ 15540730 (+) True LOC113530581
XM_034311955.1 mRNA downstream 11291 16059312 ~ 16173060 (+) True baz2a
XM_026920761.2 mRNA downstream 11291 16059312 ~ 16171317 (+) False baz2a
XM_034311688.1 mRNA downstream 162069 16210090 ~ 16216697 (+) True LOC113530889
XM_034311689.1 mRNA downstream 162629 16210650 ~ 16216697 (+) False LOC113530889
XM_026920414.2 mRNA downstream 184032 16232053 ~ 16326614 (+) True spo11
TU302132 other upstream 875487 15117112 ~ 15167668 (+) False rps21
TU302131 other upstream 922943 15117112 ~ 15120212 (+) True rps21
TU301848 other upstream 1369203 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 1369203 14669804 ~ 14673952 (+) False G254991
TU301463 other upstream 1970939 14070269 ~ 14072216 (+) False wfdc2
XR_004579698.1 other downstream 162629 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 315528 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 325221 16373242 ~ 16396212 (+) False LOC113530371
TU303060 other downstream 460004 16508025 ~ 16508380 (+) True G256046
XR_004579712.1 other downstream 1023115 17071136 ~ 17120941 (+) False itga5

Expression Profile