RNA id: TU302850


Basic Information

Item Value
RNA id TU302850
length 10158
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G255862
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16151033 ~ 16165190 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAAACAGTGGAATTTTGGACCCAGGGGACAgcaaagtgtgtgcatgtgtgcgtacATGCTTTTATAGCTGTTTCAATCCACTGTGCATGTGCAAAAATATCACATGTTAGAAAACTCGTGACACAATTTGGTGGCTAGTAATGGAATTGTACATAAATTGGACATTTTGCTGTTGACATtggattgtgttttgtttttctctgccTGCCTTTTGTCTGGTTTTGCTGAATGTTACTAATTTtgactgttttcatttttgttttcaccAATGCAGATGAATTCATTCCAAAAGCAGATTCTCAATAAACTGTatacatcatgtgtcaaactcAAGACCCTGCGTGTTCTGCTAGCTTATGCTCCGATATCTTCAATCATGGTTATTGTTCTTGGCGTTAAGAAAAAGCCAATGATAGTCCAAGAGAAAAATCAAAAAGATCTGCACCAACCAATTTTTCCTCCACATTTTTATCTTATTGTCTCTTATTTCCCTTGTTTCTGTAAAGACAGCACAAATACACTGTAGGTAATACACAGCTCttgcatttattgtttttgGTGAGAAAACAGGATTAATGGATCAGCCAAAACTGACGATTTCCAGGTGAAAAATGCACGTCCACACGCTACGTCCACAGAAGAGCATGAAGAAGACAGATGTGTAATAGTTTCACTAGTTTAAAATCTGGCACATTACTATAGACTTCACTTAGTGATGCGTTTACAGGTGTACAATTATTGTAGGAATTATAGGATTATGTGGCACAGCATGGCAATGAGTTGCTCCCTACCTGGAGGGTCGGTCATATCAgatgacatggaggggatccacatctgctccacacagactctccactggtgtctcACACGggtcagtacttggtcctcttctgttctccttcTAGACTTgatctcttggtgaggtcatatgggttttcataccactgctatacAGATGACATTCAATgcatcctctcctttcctccctcaggCTCATGTTTCTGCCTGAATCTCAGCATGTCTTGCCGAGATggatcatggatggcagctcagcTGATACTTAATCCCAGCACAATTGAAATGCTGTTCATGCCAGGTGATGCATACCCACATCAGAATCTTGTggtctccctggacaactctcaaATCTCACCTCTCACTGCATGGAACCTTGggggacaatcaactgtccttctcctctcacattgctaaactGACACGGTGATGCCGATTTCTTCTTTACAATATCAGATGGATTCGTCCATTTCAATCCACACAAGTCACGCAGGTGCTTactcagtcccttgtcattttgatACTGGAGtactgcaactcgctcctggcaTATCTGTCTCTGCATGCCATttgacctctgcaactgatccagaattcagctgcacGAATTGTTTTAAACcatcctaagttctcccacaccactcCACTGCTGTGCTTCGTCCaatggcttcctgtagctgcctgcatcaaatttaaataaccgatgcttgcctacaaagctaAAAATGGATGAGCACGCACCTACTTTAAAGCACTTATCATGCTCTGCCCTGCACcatgctccctccgatcctttagtactgctcgactggtcccactatctctcagagtacaaggaaggcataTACAAAGGCTTTTCtttgttctggcacctaggtggtagATGTATGAacaacttcccctagatgtctcaGTCACTGGTGGTCTTCAGATGATGACTAAAGGCCTAGCTCTTCATGGAGTACTTATATTAGCACTTCTAAATTAGAAAatcttgtgttgtctgtgtgattttttttttccatattataTTATCTCCCCCAATAGATTTCATTAGACTCTTtgtctgtgacctagtgaaccagtatcaggatgtatttattgatacagacttcaaagcacttctgtaagttgcccTGAATAAGGTCCCCATCAAATGCATATAtgtaaattcaaatttaataGTTATGGATTCGCAGAAAACTGGTATCGTGTGTGCAGTTATGGATTACCTTAATACCTGCCACAAACGAAAAGTTTTCATACGGCAGCTGTGTTTTAACCATAAACCACTCTTTTCTCTTTGTGGACAGAAGACCTACAGAAGAGTCTTGTAAACACAAGTGTTTGGGCTACGATGCTCCAGTGAAAATTTCTTCTCAGGAGAATATCACAAAGATAAATGCCTGTGAACGAAGTTAAATGTTACTGAGATTAGATAGTTTTTTGATAGCTCAGTGCTGTCTTGTGTCTCTAAACAGCAGCTAATGCAGACAAGGATAAAGTTATTTCAGGAGCTGTTTAATGTGCTTAAGAGATGCTTATCTCCAACGCATAACTTTGAGTTTTACTCTTATTTTCTATAATCTGTGAATATTACTAATTAAAAGTCATGCGCATATATCCATTTCACAAAACAATTTGTCATAATAGCAACCGAGTCGTTAAACTTAAAAgatgcgtgtgcatgtgtgtcaaacagacagagacaaagagggaAATGAGCGCAATAAGTTAGactaaaatatgtattttgttCAAATATTTGTTGTTGGACATCAAATTTACgcaagaaatgtttttttttttttttataaaacattaactGTAATTCTACCTTTAACCTCTGACCTGTTAACACTTAGTTAATGAAAAACTTAATGAAAACTTGATGAAAAACTCCCAAGCAAAGAATTTGGTGGATAAAGATGTGGAAAGACATGCACAATGAACACAATTATAGCTCATGATAAGAGATGATTGAAGGAGAAATgatctatttaattttttttcccggAGTAAAATGTGTTCAATTAATACCATTGCAAATATAGTTGCTGTGCctatatttttaaagttcacAGTCCTCactgagttttctttttttattgacatGTATTCTGAATTCATAATGTGTACATTATTTAAGAATTACTCAACTCCATCGTATAACAAAAAGTTAGCttcaaataactgtttctcagacTGTGAGTGGAATCAAGATAAAATCTGTCATACTGCACTGTGAGTTGGGTTCTACTGTTTACTAGGTTACTTAAAAACATGGcaaccatcagccaatcacattgcaGCACTTAATTCACAGTTCTAGCATTAAGTTACAGTCACAAAATTTTCATAGTACAGATGTGGACAAATTTATTGGTACCCTTACAGTTCTTTGAAACAATGATTTCCTCCTGAAAAGTCATTAAACCAAAAGCAATAGTCTCATATATACCTGCCTGCCCATAGCATGTAGAGAAATGACTTATTGTTCATTTTACCAagataatctaaaacagcctggCCAGATTTCTTGGTACCCCTAAAAGATTAGAAATCATTGCATTCTTACCATGCTTCAAACTAATTGTTTAACCCGAATTAGTGTCACAGGTGTCTTCAATCTTTgtaacagccaatcagcctatttaaagagagaaaacatgcCACTGTGGAGGTTGGTATCATTGTGTgcaccacactgaacatggaccagagaaagcaaaggagagagTTGTCTGAGGAgctcagaaagaaaattgtTGATAGCCATCTTAAAGGTAAAGGCTATAAGATCATCTCCAATCAGTTTGATGTTCCTGTAACATCtgcaaaaaattattaaaaagtataaggGCCATGGAATTGTAGCCAACCTCCCAGGACGTGACCGCAAGAAGAAATGCAACCCCAGGTTGATCAGAAGGATTGTACGGATGGTAGACAAAGGGCTTTTACTAAGGAGAGTGTGAACCTcaataattatgaaaaacattttgtgatttgtaaacaatatggccgtTACACGTCAAAGAAGGGGTTGGAGCCCAATTTACTCAAACAGTTGTAAACATTCATTGCTTGCATGGATTCATGTGAAACTTGAAAGACAcatacaggacaagattctgaTGTAAATGGTCATACAAAGGGTGTGGGGCTAAGGTCGAATAACTGTTTATCAGGAACTGTAAGTCCAATTGAGCTGAATGCAAATTTGGTATACCACATCTATGTCCTAGTGGATTTTTGATGATAACCTAATTACTTAAAAACATGATGGCCATTAGCCGATCAGTTTTCAGCAGGTATCTGACAGGGTTAATACTGAGCTATTGTAACGAAATCTGAATGGTACATTTGGGGATGGACCCACTACTATCTGACGCAATCTCTCTCAACACTGTGGGGGTGCTATTtatgtttgtgcacacaaaatcAACTATATCTCTTGCAAAATAAGCTGCAGAGTGAAAATTCATTTTTGGGTTGATTCTTTTGCTCAAACTGTAAAAATTGCCTTGTGGAGGATTTAGCTCGACCCATTTAAATATGTGTACtattttgcataatatgcaaaactttCTTCCACAGACTGGTCCTAGGATTTTTGCCCTGTCTTCACAACtgtggtgtcaaactactcagcagagtaTGGagctcaataattatcaaaaacatgttgacatttgtaaacaatatgccCACCTTACTTCAATCAATTCTAAGGAGGAGGAGCTGGTtttctcaaacagctgtaaGTCATGATTGGGTACATGCATTTAAACCAAATTTGAAAGACGTGATCAGTACAAGGTTTTGAGGATGTCTGCGAAGGTTGGGGCATGGTCATTGAAAGGGGCTGGTGTTCAATTAGCTGTTTCTCAGAAACCAAAAGTCCAACTGAGCTGAACATTGGACttgatttttaaacatcatttaattaCTTCAAAATCTCACACAAATAGCATTGAtttatcatcacaaaacttgataagtatgcTCATTTCtggtctctttattgttctatgtacCTTGGCAAGAACTGCTCACTGGGGACACCATTTATGAGGAGTGCTATGTtacacttcttcttcttattttttttttctctgtttaaacTGACCCTGCAGACCCAACTGTAGGTGCTACAGATGTGAAACGTAGGTAGTACTCCCTCCCACTATTCAGTCAAGAGAGATGAGCTCAATTGGCTTAACAGTGGTGCTATGGTGAAGTGTTTATGATTCACCttgcctacttcgatcaaaaggtgcaggttCTTTGTTGGTAACTctaatagtgaaggctacagcaggagacagagctttctcttacaaagcccaaaggttcaggactcagacacagtcttagtgtttaagtctaggctgaaataTGTGTTTAGTCAAgctttttgttaatatttttttcttaggtaaaggagaaGACCTGGAGGgctcacaggcatagagtgttttagtaaactgggatgtttggatgctggaATGTAGCAAGTAAGGAGTCTGctgacaaatatttattaaaacaattttgaTTGGCCAAACCGTTTGGCTGCTATAGGCCAATGTATTTTTAGGCCACTGCCTGTAGATAGATAAACACATAGATAAGAGTACTTTAGTGATCCCTGAGTGTCTCAATGTCCAGGCTACAGAAGCATTCCATAACCATGATATGTCATGATATGTTTGCATCATTTGTTGTTAACCAGCAAAGCTCCTTACCTCTCTGCTTGGTCTACCTGAACTGTCTCAAAGCTGGCAATGGTATCATTAGCATTGGGGATATGATCATGTAGCCATGTCTCAGTGACAGACATAACGCTACATTCTTGGTATTTTCCTTGATATCTTGCCAATGCCCTAAGCACATCCATTTTATTTGCCAATGACCGCACATTCCCTATGATGATAGATGTTAGGATTGGTTTGAACCGCTGTTTCATTGTCTCCTGCCCACTGCTGACACATCCAAGTGTTGTCGACTGAAAGTCTgatgtgtacagtgtaaacAGAAATGGAGACAGGACCATCCCTTGTGGCGCTCCTGTGCTGCACACCACCTGATCTGACAGACAGCTCTGTAGGTGCACAAACTGAGGTCTGGTTTTCAGGTAGTCTATGATCCAGGAGATGATGGTAGTGTCCACATGGAAACTACATTTCAGCAACTAGGGAAGGCTGAATTGTGTTGAATGCAATGTAGAAATCAAAGAACACGACCCTTACAATGCTGCCTGCCTTCTACAGGTGTGAATGAGCCCTCTGCAGTAGGTAGATTATAGCACCAACAACACATACATGGCGTCGGTAAGCAAACTGCAAGGGTTCTAGTGATGGACCAAGTGTGGGTCTGAGGTGAGCAAGAACCAGTCTTTCCAGAGTGGTCATCCTGTGTGCTGTTAGTGCCACTAATCTGAAGTCATTAGGGGCAGTTGGACCCCCATTCTTGGGTACTGGAACAATACATGAAGTTTTTAAGCACTTTGGGGCTAACTCTGTCTGGCCTTGCTGCCTTGCCCTGTTGGAGTCTCAGCAGTTCCTTCTTTCCCTGATCCACTGCATCAGTGAACCCAGGGTGTGCAGCAGAAGGTCCATCCCTGCTTGTGGACATTTCCACAATATAGGGCATCCGCGATATGCTCATAGTGACCACGCTGGATGCTAGACAGAGCCCAGAGTGGAGAGGGTGGGGGTAGGATCTACAGATGTGAAATGAATAGGGGAGGGAGAGTGAAGCTGTGGTTGTTGTAGCGACATGTGAAGCACATCAGTATGTGGTGCAGGAACAGTTTTGGACCCAGTGCTAAACCTGTTGAAAAACTGGGTGAGCTTGTTGGCCCAGTCCTTGCCACCATCAGTAAAGCCACTGCTGATCTTGAAACCAGTAATCTGTTTCATGTCATTCCACACATCTCTGATATTGTTCTGCTGCAGCTTGTTTTCCAGCTTTCTTTTGTATGAATCACTGCTCTCCCTTATTTTAAACTTCAGCTCTCTCTGCAACCACCTCGCTTGCTCCTTATCTCCAGCCCTGAAGGCTATTTTCATCCTGTTAAGCAGTGCCTTCTGCTCAGTGGATATCCATTTGTTATTTGGACAGCAGTGGACTTCATTGGTGGGAATATTGCTTTCCATACAGAAACTGATGTACCCTGTGATGCAGGCGGTCAAGCTGTTGATGTCCTTGCCATGTGGGTCATGAATGCCTTCCATTCTGTGCTTTCCAAGCAACCCCTTAGTGTCTTAACTACTTTATATGGCCATTTCCCAACAGTTCTTGTGATTGGTGGTTGTTGGCGGACAGCCATGGTATAAAGGGTAAGCAGTATCATATTGTGGTCTGAGCTGCCAAGTGGATAAAAGCAGCAGAGTTGTATGTTTGCATACAACAAGTCCAAAGTTCTATTGACTCCTGTTGCACAACTTATGAACTGGTGAAAGGTGGGAAGTGTGGACAAAATTGAAACATGATTAAAGTTTCCCGATATAGCCAGAAAAGCATTTTGGTGCTTTGTGAGTACTGTAGTTTAGCAGTGATGAAGTGGATGATGTCACATGCTGCATGCAGTGCCTCCGATGGAGGAATGTAAACAACAACGGTGTGTGAGAATTCTCTCGGCAAGTAGTATGGGCACATACCCACCACCAACAGCTCAATGTCCGGGCTACAGAAGCATTCCTTAATCATGATATGTCCAGGATTGCATCatttgcattgcattctggTGTCTCGGTCCACTCGAACTGTCTGAAAGCTGGTGATGATAGCATTAGCATCGGGGATATGATTATGTAGCCATGTTTCAGTGAAACACAAGTCTGACAGACATAATGCTACATTCTCAGTATTCCCCTTGTTATCTTCCTGATGCCCTTAGCATATCCATTTTATTTGCCAATGACCATATATTCTCTGTTAGATGTTAGGAACAGTTTGAAGCACTGTTTCACTCTTCTCCGTTTCACTCCGACTCTGCATCCTCGGCATCACGACCTCAACTCCTCCAGGATCTGAATCATAACCCTGGCCGACAGAGCTGGCTCGCGCAATGCAATCAGCTATTCTCAAGTGTAAACAATGTGTTCAGCATCCATCTCAGCATTGTTTAGTGGCAAAATCATagacacagcacaacacagcaaaTGACAGATATGACTAACATGAAGTCTTGACTTAAGACTAAGACTTACAATCGGACTTAAGTCTAAGACTTcaagtaacaaaaacaaaagaaaaacaaaacacactacacGGAGCTGCTGCAACAGGCTGCCAATAATACGGCATAAAAAAGACACAGCCACAGGCTGAAAAAAGCTGTATCTTCTTAACACAATGTCAGATTTCTATTACATTTCTAAGACATGATGTAGTCTGTGGTATAATTTCATAACAAATGGCCAGCAGGGAGCACAATaactaaaatatgcaaatacagtcccctccaaaagcattgaaatagcaaggccaattattttgtttttgctatacattgaagacattcgggtctgagatcaaaagatgaatacgagacgatagatcagaatttcagcataatttccttatatttacatctagatgtgttaaacaacttagaacatgggcACATTTGACACAGGATGGTGAATTTTGCTATGCTTTTTCTTGGCCAAAATTGAGAACTTTATCTACagttatttttctaattaaaccAAAATGGAGGACCCTGAGAAACAAGAACAGCTTGTGGTCATCCAATCCCAAAAATGGTGAACTTTACTGAGGCCGATGTGCATCCTGCATCTgcctcaataaaaaaaaaagaacacgtTCTTCCTCCTTCTGTGCTCGCCTTAATGATGCAATTTGATCTAGTCCATAGAGCTTACCTGTCCAATGCTAAATTCAGCACATATCTATCAGAATATTAGCCCCACCCGTTCTGACGGCAGTGCAGAACCATATGTTTTGGTCATGTAAAAAGTTGAAAAGGTTCTGGTTAGATATTTTTAGTACTTTATCAGCAGCTTGTAATTATAAGTTCGATCCTTATTAGCTGGAACTCCAGTAACCCTCCATCTCATGCTCTCTGGTTGAAaaccttgtgtttttttcttactctggataaaatacattatagttTGAGAGGGTCTGCTGATCTTTTTCATAGGTCTTGGCAGCCtttcattaaattttttatgaACTTTTTTTAGAATTGCCATCTGAGTAagagcaaacagttttttttctttcttcttttaaaaaatattttatttcactcaatcatttagcttttttaaatttttttatttttaactattttacTGCTCTTTTGTTATTGGGGGGTTTGAttgtttaaaatacaaaaatgatgACATGTTTAGGTATGCCACTGGTTATATACTGTTGCAGTGTGCAATTGAGCAGACTGGTCAAGGTGCAAATCTGCATCAGTGTCTGTGGTAAAAACCTACTTCTTTAGtaattttattttgctcaggAGCTCTGCTCTTAGGTAAAGCAATTTAATTGGGGGTTCATGGTCACAGAGGGTTATGATAAACTGGGCTGAGTAACTCCTCTTGCCCTCTGGACTCGTCTACACTGAGCCTTCTGCATTATTTGCCTTTTCTTTAGATGACTGAACAATGTAATAATCAAAATCCCACTATCCACTGTGCCCTAAATGAGGATTGGTTCCTTCTGATTCCTCACTGTTTTGTGACTATAGATATTGTTATGGGATATACAGACAAAGACTGCATCGAAAAAGTTGTTAGTGACTATAACAAGGGTGCATTAAGACaaagtaaatgaaatatacaaaaCTGTCTGAATGCCATTCAGTGACTGGTGGTATGTTCTCACCACTTTGACGATAGATTTCTCCCAGGCAATGGCTCTTTCCAACTGCAGCAGACACAAGGAGAGCTGCGATGCACTTCGGCCCATGGCAATCTCCTCTCCTCCAGGTGGGGATGTAGGAGGAGCTAAGCGCATCACCTCAGCAAGATTCCACAGTGGCCCCTTGAGGTAACGTCGCTCAATATTCCTCTCCAGGTTGGTGAGGCGCATAACGGCCAGATCCAGGGGGTTTGTGGGTACACGCAAGAGGTCCCACCACTCTTTTTTGCTCCTCAGCATCCAGTCTTCTCTGGGGTCCACCTCATGTTCGTAATATTGCAGGTCTTCCCTGGTGGAGTCAGGCTCTGGGGCAGTGAAAAcctgaacaagaaaaaaagatagataAAACAGGAAGATACAGAAAACAGGAATAGCAAAGAACAACAGAATAAGCTAAGGGTAAACCAGTCTACGAATCATCTTAGCAAGCAAAGTCTACCATTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302872 lncRNA downstream 15974 16134461 ~ 16135059 (-) True G255884
TU302856 lncRNA downstream 115755 15992254 ~ 16035278 (-) True G255868
TU302860 lncRNA downstream 151873 15976920 ~ 15999160 (-) True G255872
TU302839 lncRNA downstream 199072 15951555 ~ 15951961 (-) True G255851
TU302834 lncRNA downstream 202404 15948239 ~ 15948629 (-) True G255846
TU302852 lncRNA upstream 9322 16174512 ~ 16181132 (-) True G255864
TU302883 lncRNA upstream 34710 16199900 ~ 16200332 (-) True G255892
TU302894 lncRNA upstream 49811 16215001 ~ 16215228 (-) True G255903
TU302895 lncRNA upstream 51289 16216479 ~ 16216695 (-) True G255904
TU303013 lncRNA upstream 201965 16367155 ~ 16378597 (-) True G256004
XM_026920962.2 mRNA downstream 330792 15658336 ~ 15820241 (-) False znf512b
XM_026920960.2 mRNA downstream 330792 15658336 ~ 15820241 (-) False znf512b
XM_026920961.2 mRNA downstream 330793 15658336 ~ 15820240 (-) False znf512b
XM_026920967.2 mRNA downstream 330793 15658784 ~ 15820240 (-) False znf512b
XM_026920969.2 mRNA downstream 330793 15659186 ~ 15820240 (-) False znf512b
XM_026920856.2 mRNA upstream 408836 16574026 ~ 16587748 (-) True sars1
XM_034311723.1 mRNA upstream 476270 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA upstream 476270 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA upstream 476270 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA upstream 476270 16641460 ~ 16647419 (-) False si:ch211-207e14.4
TU302676 other downstream 330879 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 663174 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 1446763 14699272 ~ 14704270 (-) False G255071
XR_004579684.1 other downstream 2000452 14129216 ~ 14150581 (-) True LOC113530423
XR_003403156.2 other upstream 482633 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 648194 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 1511375 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1727891 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 2120296 18285486 ~ 18300687 (-) False znf217

Expression Profile