RNA id: XM_026920275.2


Basic Information

Item Value
RNA id XM_026920275.2
length 1971
RNA type mRNA
GC content 0.39
exon number 9
gene id LOC113530371
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16363546 ~ 16396245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagagcaataaacagaagaaaataatggGAGTGAAGATAATACCCATTGCACAGTGACGAGGAAGGAGCACTAAATGCTGGACAGTTCAGGCAAAGAGAGATGTCGTCCTACTTGCGCAACAAGGACCTGTCATCTCGCACCAGGAAACCTGTTTTGGAGTCACCACCCTCCTCCCCATCCTCTGGCAACAAAAGCTTCAGACGACATAGACTAACAGTGGGAATTCCACTCCATTTGAgtggaggagcagcagcagttcATGGCTGGAGCCCAACTGGAACGCTGCTCTGCATTAATAAGcaTGACAGATTATCTAGGGGTGATGCCAGTGAAGTGGAAAGCGCTTCGGAAACGCAAGGTCATACCAGCTACTACACACGTAGAGAACTGGATTCTCTAAACAAGACAACTGACTCTCCCAGCAAGGACTTCAAGAAGCTGTATGAGGAGGCACTGGCAGAAAATGAGAAGCTCAAGGCTTGTCTGGAAGATAGCAAGCAGGATCTAGCTAAATTCCGTTTGCAACTGGACAAAGTCACAAAGaaGCAAGACAGAATACCTGAGAGGTCCAGTGTATTTGATTCAGAAAAAATGGAAAAGCAGGTATTGGAGAAGAGGGTGTCTGAGATGGAAGAAGAGCTTAAGGTTTTGACAGAGCTGAAGTCAGATAACCAGCGCCTAAAGGATGAAAATGGGGCTTTAATCAGAGTGATCAGCAAACTTTCCAAGTGAGGCTATGTGCACAATCACACAGAGTGTCAAGAGATTCACTGACTTGAAAGCCTTCACTTGCCAAGTTCTTGAAAGCCTTCACTTGAAAGCCTTCACTTGCCACTGATCTTGCTACTGAGAGAGAGCATAAATCATGTCATGTGACATGACAAATGATTTATGCTCTCTCTCATTTCACCGACTCCGAGAGAGCATAAAATGATTTATGCTCTCCGACTGTCTCTAAACATGCCTTTTGTTACAAAGATAATGTCAAATGTGATTCTTCAAATGAACTGCCTTACCACTTGTTGCAAAATTCAACAAACTCTTCCTTAATACATTCCAGGTATtgtgaaaacacattttgtacacattttgtACTGTCAaccttgaattgaattgaacttggcttttaccatttgatttacataAATTGTGTACCTTGAAATGTtacaaaatacatacattttattttattgtgacacaaagaTCAATTAACCAAAAATAGACATTTGtttttgcataagtatttaagAGGGATGTTTCCAAGCTCCTGTGCTACCTTTTTGTGGGTGCAATTCACAGCATCTTGAGCTCTCTTAACCACCACACTCTCTGATAATGTTctgcagacgcccttatccagagcaacttacatttatctcatttttttatacaactgagcagttgagggttaagggccttgcacaagggcccagcagtggcagcttggtggtgctggggattgaactcatgatcagtagtccaacgtcttaaccactgagctaaaagatactgtttaaatgccaaTAATCTGACATGATCTATAATTGCATTTCCGTGCACCTCACAGTGAAATGCAGTAGTTAAAAGATGTGGAATTGTGTAGCATATGCTGAtgtttttgcactttgttttgatttcttaaaatttttgttaaactgaTCATAGAAGAAAATTTACAATGTGCCTAATACATTAAACAATCAGGATTCTGATGTTATAGCATAATAAGAACAGTATTCTTGTAACAGTTGCATAATGCTGTTTCTGTgctttgcatttaatttaatcaaatcattttgattgatacacttttttttttctacacattTTGCACAAGACTGGTCACCATTGTCACATGTTGTGTctgtcttttaaaataaaggtcTACCAATTCATGTCTGGCTTTTTAAGCACATTTGTGAAGCAtcgaaaaaaaataaataaataagaaaagaaaattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302921 lncRNA upstream 45240 16317149 ~ 16318306 (+) False spo11
TU302907 lncRNA upstream 53984 16232013 ~ 16309562 (+) False spo11
TU302802 lncRNA upstream 182526 16178137 ~ 16181020 (+) True G255815
XR_004579732.1 lncRNA upstream 311164 16049222 ~ 16052382 (+) False LOC117599274
TU302797 lncRNA upstream 311191 16048562 ~ 16052355 (+) True LOC117599274
TU303058 lncRNA downstream 108817 16505062 ~ 16505504 (+) True G256044
TU303059 lncRNA downstream 110532 16506777 ~ 16507014 (+) True G256045
TU303063 lncRNA downstream 176450 16572695 ~ 16574471 (+) True G256049
TU303086 lncRNA downstream 229998 16626243 ~ 16626596 (+) True G256068
TU303087 lncRNA downstream 232388 16628633 ~ 16629238 (+) True G256069
XM_026920414.2 mRNA upstream 36932 16232053 ~ 16326614 (+) True spo11
XM_034311688.1 mRNA upstream 146849 16210090 ~ 16216697 (+) True LOC113530889
XM_034311689.1 mRNA upstream 146849 16210650 ~ 16216697 (+) False LOC113530889
XM_034311955.1 mRNA upstream 190486 16059312 ~ 16173060 (+) True baz2a
XM_026920761.2 mRNA upstream 192229 16059312 ~ 16171317 (+) False baz2a
XM_026920784.2 mRNA downstream 193145 16589390 ~ 16620439 (+) True plpbp
XM_026920785.2 mRNA downstream 193269 16589514 ~ 16620443 (+) False plpbp
XM_026920161.2 mRNA downstream 399055 16795300 ~ 16822795 (+) False racgap1
XM_026920160.2 mRNA downstream 399057 16795302 ~ 16823847 (+) True racgap1
XM_026920162.2 mRNA downstream 434321 16830566 ~ 16846985 (+) True bin2a
XR_004579698.1 other upstream 134140 16210650 ~ 16229406 (+) False LOC113530889
TU302132 other upstream 1195878 15117112 ~ 15167668 (+) False rps21
TU302131 other upstream 1243334 15117112 ~ 15120212 (+) True rps21
TU301848 other upstream 1689594 14669804 ~ 14673952 (+) False G254991
TU303060 other downstream 111780 16508025 ~ 16508380 (+) True G256046
XR_004579712.1 other downstream 674891 17071136 ~ 17120941 (+) False itga5
TU304341 other downstream 2483323 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 2636672 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 3082057 19478302 ~ 19478895 (+) True G257622

Expression Profile