RNA id: TU303063


Basic Information

Item Value
RNA id TU303063
length 1595
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G256049
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16572695 ~ 16574471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtggaaatggGAGTAATTataggagtcccacagtgactggcaCAGCCCCATAATGCTGGGTCCCCAGGCAGATGGGGAGGTCCATTTCTGTGTGGCCTTCCCCAAAGTGAATGTAGATTCTGAATTTGATGACTCTCCAATGCCTCATACTGAAGAACTCCTCGATTGGCTAGGCTCGTCTCATTTTAATTCGACAATGGATTTGACAAAGGACTATTGGTAGATTCCTTTGTCACCCAAGTCCAAGGAAAGCTCCGGTCGGGTTACATGAATTTGTCTCACTAACATGATGGATCAGGCCCCACAATGCACATGCCGCTGGGTACTTAAATGACATAATAGTCTACAGTAATCATGTGTGGCATTATGTGATGGTGGTCCTAAAGTCTTTGAGACTGTCCAGCCTCACAGCAAACCCAGCAAAATGTGCtattggatggatggaggtaTGGCATCTGGGCTTCCATGTGGGTCATAGGCAGGTGCATCCCCAAATTAATAAGTCTGCTGCAATTGCAGCCTGCCCAAGATTCGAGAGATTTAACATGGCACACCTGTGGCCTATTTGTGAGTGTATAGTAGCAAGctatttgtctttctctctgagcTGAGTGCATGTGTGAGGCAGATATCTAAAGCAACTGATATGCAGTCACGTTTCAGCAGCTCAAAGCTTAATTTTTACgttcttctttcttttgctttcttttttgttttttgtacagTGGCACTGCACATGCTCAAAATAAACGCTCATGTGTGCAGTCACCATGAGTTTGCTGGATTCCACAGTAGCATTCCATTGTCATTGCCAAAATGTGACTGTGTTTCAACTGGATTGTCTACAGAACAAAATTATTTCAGTGAGGCATTGTGTCCATGAACTGTAGTGACACAAACTTCATAAGCATCATGGGAGTGTAGTATAGAAACACAGCATGGTGTTCACTGCATATGGTGGTGGCAGGCTTCACCAGCCACTAGGCCACAGCTACAGTCATACCAGTAAAACAAGAGGAACTTTTTTGAAACATTCCCCAGATCAAAGTGCTAACATGACagctaattattttataatattgcCCTGTTTAGTACAAACTACAGTACAATCCAAACTGGCTTTAACAGTGTCATAAAACAGTCATGACACAttgtttcatattcatttatttggatGTGCCACCATACTCATATCCCTTTGAAGATATCTCAAGCAAGTTCTGTACATGTCACTGTTGACAGCTAGAACAGGTCACCAGTGAAGAAGCCATGTTTCACATCAAGGAAACTAACCATAATGTTGACAGATTTACATGCatgattagaaaataaaaagaggtggcatgaaattatatattataatagaCTAATGGTATGAAATAGAAGTTAGAAGGGACCAGTAATGAATAGCCACAGCTGCAGGACAGAAGTTTTTAAGAGTCGTTCACTGACATGTTCTCCACTTTGTTTTGCAAGTCAGTGGCATTGGCTtgctgcttctttttctttcctccctctTGTTGTTTCTTGTGCTTCTTTGAAAACTCTTGGTCAATAGGAGCTGCCTTCACAAACTTGATTATTTCTGTTAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303059 lncRNA upstream 65681 16506777 ~ 16507014 (+) True G256045
TU303058 lncRNA upstream 67191 16505062 ~ 16505504 (+) True G256044
TU302914 lncRNA upstream 176483 16385205 ~ 16396212 (+) True LOC113530371
TU302921 lncRNA upstream 254389 16317149 ~ 16318306 (+) False spo11
TU302907 lncRNA upstream 263133 16232013 ~ 16309562 (+) False spo11
TU303086 lncRNA downstream 51772 16626243 ~ 16626596 (+) True G256068
TU303087 lncRNA downstream 54162 16628633 ~ 16629238 (+) True G256069
TU303078 lncRNA downstream 64121 16638592 ~ 16643049 (+) True G256063
TU303097 lncRNA downstream 87181 16661652 ~ 16729166 (+) True G256077
TU303096 lncRNA downstream 109047 16683518 ~ 16694955 (+) True G256076
XM_026920275.2 mRNA upstream 176450 16363546 ~ 16396245 (+) False LOC113530371
XM_026920273.2 mRNA upstream 176450 16363569 ~ 16396245 (+) False LOC113530371
XM_026920278.2 mRNA upstream 176516 16363573 ~ 16396179 (+) False LOC113530371
XM_026920280.2 mRNA upstream 176516 16363587 ~ 16396179 (+) False LOC113530371
XM_026920279.2 mRNA upstream 176516 16371497 ~ 16396179 (+) False LOC113530371
XM_026920784.2 mRNA downstream 14919 16589390 ~ 16620439 (+) True plpbp
XM_026920785.2 mRNA downstream 15043 16589514 ~ 16620443 (+) False plpbp
XM_026920161.2 mRNA downstream 220829 16795300 ~ 16822795 (+) False racgap1
XM_026920160.2 mRNA downstream 220831 16795302 ~ 16823847 (+) True racgap1
XM_026920162.2 mRNA downstream 256095 16830566 ~ 16846985 (+) True bin2a
TU303060 other upstream 64315 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 176483 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 177695 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 343289 16210650 ~ 16229406 (+) False LOC113530889
TU302132 other upstream 1405027 15117112 ~ 15167668 (+) False rps21
XR_004579712.1 other downstream 496665 17071136 ~ 17120941 (+) False itga5
TU304341 other downstream 2305097 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 2458446 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2903831 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3816338 20390809 ~ 20398714 (+) True G258096

Expression Profile