RNA id: TU303142


Basic Information

Item Value
RNA id TU303142
length 2696
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G256114
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16847154 ~ 16851180 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGACTGAAGCTGGAGCTCCATTGTTCCGGATACAGAGCGAATGTTCACCTCTACTAGCATGCGTACCTCGTGCACTAGTCTATTTTCACTGTATCTACTTTTACATGTGTTGCTTCgttaaatgttgtttttaaaacGTCATGGaagtctgaaataaaataagtaacCGATCAGTGTGAACAAATGCCTCTAGACGACAACAAACTCTGTCAGGTTTAGGTGTTCGCGCTTTTCATCATGGCTACCACATCACCTTTTAACCTCACAGAAATGGTGCCAACAAATGTGGCCCCAAACCATAGAGATTCTACTGTGGTAGGAGtgGTGATTGTGCTGGTCTTGTGTACACTGGCTGGCTTGGCGTACCTGTTGTATCGCTACCTGTGTCACAACAAGGGCATCTACAGGACAACAGGAGAGGCTGGGCCAGGTGTGGACCCAGACCAAGGCTACCATGACACAGTCACTGAAAACAAGGAGTACTTCATTTAAAGTAATCCAGACTGCCATGGATGAGTTGGCAGTGAAGGTCATGTTGAATAGGTATTGACATTTAGATTTTTTGCTGAGAAGAGTGATGTGCTGTAGGAGCACAGCCACTGTGGAGACTGTGCGCTAACTAAGGTAATGATTAAGTTTGTGCTTTGGTGTTTTGGGGTTTTATTAATCTAATGATGCATATTGATGTATAAGAAGCAGGGTGAGTgggtcatatagtgtatcaaaCCTTGTTTCTCTGTGCAACAGATTTACATATGTACCTGACACCTTCTTTTGGTGGTGAGATGCAATGGAACTGCCACCTCTGTTAAATACACAAGTTAGTTGAATGACCATAACATGTTTGACCTACGAGCAATAATCCCGTTAATACACAATAATCCCGTTCTCAAATATGTTTCTGTTCACAAGGCGGGTGATGTTTGTTTATAAATGCTGGCATACCTGCTTTTCTTCTGTGGCTGACTCTACTTTCACACTAGCAAATGACTTGTGTTACTTGTAGTTTTTCTCTTGTGGGTGTATACTGACTGTTTAAATCccaactaattgcaggtaggaactaaagtttgAAGTGGGGAACTGAAGCAATGTCGGACTATGGAGGCATAGGACTGGTCTGAGCAatcaatcgtttggatttgttacTTTACCGTGCCATAACTAAtctgcatagaattgagaaaatttaaattcaaattgtTACTTCCCACTGTGGATGAAATCACAGCTGTGTCTGCATATAGAAAATTACCTGTGCCTGCTGCTTTctcacactatatatatatatatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatataattaatataaaatccTACACAGGGAGAGCCAGGAGCCTATCCCcagggactcggggcacaaggcagggcacaccctgaatggggtgccaacccatcgcagggcataattatgcgcacacacacacaccccaatcACACATTGTGAtacctgtggaggttgttggtgatgtcgcTGACTgctgttttggggtttttcttcacaactCCCATAATGTTTGTGTCATTGACTGatgctgttttccttggctgacctgttcgatgtctggttgttagtacaccagtggtttttttttttttttcccctctccagGACACTCCATAATGTTGTACTGGCTATGTCCAATGCTTGTGCTGTGGCTGTGATcgattttcccttttttctctgggcccaaaccaagagtagacattcagagctattaattgtttaaacaatcaatctaacagggcacaccagGACAcaaagaaacacctgtcagtcacatgttcacacatttttgatcatttgaaaaaaaaagggtgggttcaaacaaaaggtgcttAACACATCTATATCtacacatatacatttatataatatcaggaaatgaaagctgaaatcctgatctatcatatcatattcatcttttgatctcaaacccaaatgtcttcagtgtacagcaaaagaattggccttgccgttccagcAATTTCAAAGGggactgtgtgtgagagcaaACTGAGTATGAGAGCAAACATCCAGCCAAATAAAGTACATTGAGTACAACACAGTGGTGCTTATAACCACGTGTCACAACACACAACCAGACATACAAGGAATGGCAGCTTATGAGGTTTACCTAGGGTTAGGTGTGGCTACTGCATGTTCAACACAGGCTGCAAATATGAAGCTAGAATTAGaacatagaaaaatattaagttGTGCATCTTTTGCTTCATGTGCTCGGTTATGTTGTCGCCTAACCAAATCCAGCAACTATTATTACCACCAATACGCTAGATACTTActgattaaaagaaaacacaaaaaagggtATTTTGAGAAACCTTTTATTCTTTGCATGCTTAGGCTATCCCCttattttaaatgctgtttattaaaaatatttttaatcattatcatgtgAATAATCATTCACATGTCCAGCTTATATGACAACACTGTGCATtgagtatatttttattttcctttgtttGTAAATCACAAGCATTGGTGCTTAATGTCAATTTTTAGTTTTTCTGCAATCCCACTGTTAACTAATTCTGTAACTAATTTGAATTCTGTAACTAATATGATCAGATTAAAAGTTAAGTTCATGCTTTGTAATT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303122 lncRNA upstream 84608 16756532 ~ 16762546 (+) True G256097
TU303097 lncRNA upstream 117988 16661652 ~ 16729166 (+) True G256077
TU303096 lncRNA upstream 152199 16683518 ~ 16694955 (+) True G256076
TU303078 lncRNA upstream 204105 16638592 ~ 16643049 (+) True G256063
TU303087 lncRNA upstream 217916 16628633 ~ 16629238 (+) True G256069
TU303148 lncRNA downstream 25622 16876802 ~ 16877036 (+) True G256119
TU303285 lncRNA downstream 71731 16922911 ~ 16923403 (+) True G256239
XR_003403182.2 lncRNA downstream 196897 17048077 ~ 17050931 (+) True LOC113530783
TU303360 lncRNA downstream 197724 17048904 ~ 17049092 (+) False LOC113530783
TU303367 lncRNA downstream 203686 17054866 ~ 17055091 (+) True G256319
XM_026920162.2 mRNA upstream 169 16830566 ~ 16846985 (+) True bin2a
XM_026920163.2 mRNA upstream 169 16830566 ~ 16846985 (+) False bin2a
XM_026920160.2 mRNA upstream 23307 16795302 ~ 16823847 (+) True racgap1
XM_026920161.2 mRNA upstream 24359 16795300 ~ 16822795 (+) False racgap1
XM_026920785.2 mRNA upstream 226711 16589514 ~ 16620443 (+) False plpbp
XM_026920396.2 mRNA downstream 21683 16872863 ~ 16914072 (+) False pou6f1
XM_026920395.2 mRNA downstream 22780 16873960 ~ 16914072 (+) False pou6f1
XM_026920394.2 mRNA downstream 25987 16877167 ~ 16914072 (+) False pou6f1
XM_026920393.2 mRNA downstream 26108 16877288 ~ 16914072 (+) True pou6f1
XM_034311789.1 mRNA downstream 26108 16877288 ~ 16913283 (+) False pou6f1
TU303060 other upstream 338774 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 450942 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 452154 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 617748 16210650 ~ 16229406 (+) False LOC113530889
TU302132 other upstream 1679486 15117112 ~ 15167668 (+) False rps21
XR_004579712.1 other downstream 219956 17071136 ~ 17120941 (+) False itga5
TU304341 other downstream 2028388 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 2181737 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2627122 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3539629 20390809 ~ 20398714 (+) True G258096

Expression Profile