RNA id: TU303189


Basic Information

Item Value
RNA id TU303189
length 1057
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G256160
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16631392 ~ 16632448 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgtTGATGAAGatatgaagaaaatcctacagaaacagctggtctttatttggggttaatcagaataattcaATTGATGAcaactgtatgataattacttttgaacatgagactgaatgtgattggttcctTCTGAaaacagccacatccccaaggatgtgcacacttatgcaaccaggttattgtaactttttaaaaattttctctacaattatttttcacttaatttttatactttgtaatttcacattgagggtgggaaatgttctgacatgatttatcttggtttaatttttttacattacaaaaaccattttaacaggagtgtgtagacttttttatccattgtaCAGCCACAGGATGTAAGCCATCCTCTTTTTATGATCTCACAATGAGGGTTCAAACCAGAGAGAAATGTGAGCCCCCTCTTTGGAGCCACATCAAATGGCAGTGATCAGCCTGAGAGCAAGAAAGTCTGTGTCTTTCACAGTCCATCGAGTGTGTCAGTTAGAACAGAGTTAGATCTGTGTGTCGGTTAGACCTGACAAAGGTGAGTGGATGACTTTTGTTCGTGGAAGTGACATACTCATGGTTTTCAGCCCTTCTGTAAAAGAGCTTTAATATAAGGGTGCCCCCTACCTGTCTGTGACATCTCCACAAGAGGGGGCTATGGAGATTGGTGTTGACTACGCCACCCCAAGTAGGGGAACAGCGGGTGAACAAGTGACAATAGGGCCCTTACCTGAAAACGTCATACTCATTACAATTGTATACAAAATCCCTTTATTCGATAATTAGTTGTGTACAAAAAATAGATTAACACACTCTTGACTTGGGATGTAATAAGAAGTTTGGTTTGGTGTACGCACACTGCGCACACAAGAAGGGAGGAGCCCTGCACACTGATGGAATAAAGGACACAATGTGGCTGCGCCAAAGAAACCTAACAAAAAGAATCAAAGGAATACATCAAATTCAACccaataaatgaatcaaattagAGATCATTCCACATCAAACACATGTGGGAACAGCAATAAAGAGGGAGGGGGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303198 lncRNA downstream 1875 16628981 ~ 16629517 (-) True G256166
TU303194 lncRNA downstream 4775 16626242 ~ 16626617 (-) True G256164
TU303193 lncRNA downstream 4857 16626242 ~ 16626535 (-) False G256164
TU303192 lncRNA downstream 6620 16624466 ~ 16624772 (-) True G256163
XR_003403197.2 lncRNA downstream 65919 16560724 ~ 16565473 (-) True LOC113530939
TU303191 lncRNA upstream 4440 16636888 ~ 16637725 (-) True G256162
XR_003403153.2 lncRNA upstream 148680 16781128 ~ 16782877 (-) True LOC113530431
TU303233 lncRNA upstream 160469 16792917 ~ 16793280 (-) True G256197
TU303235 lncRNA upstream 161996 16794444 ~ 16794769 (-) True G256199
TU303249 lncRNA upstream 196767 16829215 ~ 16829435 (-) True G256212
XM_026920856.2 mRNA downstream 43644 16574026 ~ 16587748 (-) True sars1
XM_026920967.2 mRNA downstream 811152 15658784 ~ 15820240 (-) False znf512b
XM_026920969.2 mRNA downstream 811152 15659186 ~ 15820240 (-) False znf512b
XM_026920964.2 mRNA downstream 822372 15658336 ~ 15809020 (-) False znf512b
XM_034311723.1 mRNA upstream 9012 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA upstream 9012 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA upstream 9012 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA upstream 9012 16641460 ~ 16647419 (-) False si:ch211-207e14.4
XM_026920437.2 mRNA upstream 15375 16647823 ~ 16695031 (-) True fam50a
TU302676 other downstream 811238 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1143533 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 1927122 14699272 ~ 14704270 (-) False G255071
XR_004579684.1 other downstream 2480811 14129216 ~ 14150581 (-) True LOC113530423
XR_003403156.2 other upstream 15375 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 180936 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 1044117 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1260633 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 1653038 18285486 ~ 18300687 (-) False znf217

Expression Profile