RNA id: XM_026920854.2


Basic Information

Item Value
RNA id XM_026920854.2
length 2572
RNA type mRNA
GC content 0.37
exon number 4
gene id dazap2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16852928 ~ 16871164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAAAAGAAATGACGTAGAGGAGTACACAGACTGAACCGACGGAGGAAAACAAGGAAGTAGCCAGGACGCgagttttgtgttttcatacactctgttttaaattaatttgtattCGACAAAGAACGATGAATAACAAAGGGTCATATCCACAACAGGCTGTGTATCCTCAGCAGAGCACAGCACCCATATACCCTCCTGCTATGCAAGTGCCACCACCCCAGGTACCCCCATACACAGATGCCCCTCCTGCCTATTCTGAGATCTATCAGCCAAGGTATATGCACCCACCCCAGGTTACTGGGCAGCTACCTCcaataaccactgcatacccTGCAACTCAAATGTTTGTGCCCATGCCCCAGACTGTGCCTGTTGGTGCAATGACCCCTAATGTTCCCATGGGTTACTACCCCATGGGACCTGTGTATCCTCCAGGCTCCACAGTCCTAGTGGAAGGGGGATTTGATGCTGGAGCTCGATTTGGCCCTGGTAGCACTGCTTCCATACCTCCCCCTCCTCCTGGACATGCTCCAAATGCAGCACAGCTGGCAGCAATGCAGGGTGCAAATGTGGTGATGACACAACGCAAGAGCAACTTCTTCATGGGTGGTTCAGGAGGGGGTTACACTATTTGGTAACAGTGAGAAGGACCAGATTGGACCTTGACCTTTCCCCTTGTCTGGTGTTCTCTTTCTTCCCCTCTCTCCTGCCTCACCAGGGGCACTTTGGCTATGCCATGATAGTGATACAACagaatgtaatgttttataGTTCCCACTAACAGTACAGTACTTTGTTGATGtctttcagttttaaaatacaTGATAGATTATACTCCTACTTTTAGACCATGTTTATTTATGATTGGAAAACAGAATAACATTTATCTTTAGCTAATTTCTATCTATGTGGcagataaatgataaatgttgtTTGATTTTCATGATGTTTAACAACCAACACACCCTTACTACTACTGTATTTGTTAGCTCTGCCCTActatcatttatttacattatttacattttacccAGTAAAATGGCTTctcataatatatttatttaattacatacaATAACGTTAgttatatagaatattttaCACATTCTAATTACAACAGAGTACTGTACTGCACTTTTGGGAAAGATTAGATAAATATAATTGGGTGTCAAAATTGAGCACCGCaactttaacatttacagattaaaatgcagtaaataCGCCCTCATATTTGATTCAGAACACTGGTTGGCTTTTTATTTCCACATCATGTCGGATACCCAGAACTGTATATAATGCTGTTTAATTTTAGTTTAGTGAAACAAGAGTTTACAACAGTTTTCACAAAGGGTTTGTGCTTCACACACTACTTTCTTTAGCATCATTCTCAtagtttaattaattagaaatttTTTATGTTTAGGGGTTAatcaagacttttttttcccccaggaaTGTACTTAAGCACATCAAGCAATTTCTTTTTCTAGTgaacatttaaatgtataacCAAGGAGCTGGTTGTACCAAAGATTTGGATTAGAATGCACTAAAAGCTTTTAATGTGACTTGAAATTCTTCTCTGAATAATTCTGCACATAtgattaatgaaattaataaatgatacaTAGATACATATCGATGCATCATGATGGTTCTACATGCTTTTTGCACTTTTATCAAAgctattttcttttaatgaagCAGTAATTTTTAGAAATactacacacatttatttatgtgcacAGTCAACCAACTCTGAAATATTAGACTTTTTGGAACTTGGTTTTTGTAGTCATGCTTTATACATGCAAATACAGTGTCGGTCATTAAATTTTGTTGTGTGGATGCTTTTTCAAGGTTGTTTTATTATACATGCCTTCCACTGAAAAGACATACAAATTcttaattttaagttttctgatctgtttgtctctgttgggttgacacaattctaacagATAGGGAGTGGTGCCTTTCAATTTCAGTGTTAAACTCAAGAAAGGGACTTTTTATCTTTTGTTCTATAATgccatcattttatttttaccaacTCTCCATCATATACATCATAATGTTCTGACCTTTAACACCACCCAGAACATTGAACATTGAACATCGAACATCACTGTGCATCTATAGCAGGAAACCAGTATTGTGCACAAAAAGTTCTAATTTTCACTAGCTGTTCAGCTGCTTGTCCTGTTAAAGTATGTAATTAACTTGTTTTCATTTAGCTTATTATACAGACCCTCATGTTTAGTCTtatgttattcatttcagttttttcccTGAAAACTTACATTTAACAGCAGCACCACTGGGTATCCGACAGTAGATTCAGAAGAGGTTCACAAAGATTTTACTCTCAGATATGTACATCATTTTAATGAAGTTCAAACTTAAACAGCCTAAAAGAGGGCAAAAGTTTCAGACCATTTGCATGTGATCATAATTAGTATTGGAAACAGGCATTTATGTAGTATACTAAGATCACCATTACCCAATACTAGCCACTTGCAGTGTGCATTTATGGGttctaatatataaatataaaaggttTGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303245 lncRNA downstream 256 16851733 ~ 16852672 (-) True G256208
TU303249 lncRNA downstream 23493 16829215 ~ 16829435 (-) True G256212
TU303235 lncRNA downstream 58159 16794444 ~ 16794769 (-) True G256199
TU303233 lncRNA downstream 59648 16792917 ~ 16793280 (-) True G256197
XR_003403153.2 lncRNA downstream 70051 16781128 ~ 16782877 (-) True LOC113530431
TU303260 lncRNA upstream 3398 16874562 ~ 16874767 (-) True G256223
TU303344 lncRNA upstream 162727 17033891 ~ 17034208 (-) True G256296
TU303361 lncRNA upstream 177488 17048652 ~ 17048999 (-) True G256313
TU303416 lncRNA upstream 232568 17103732 ~ 17106368 (-) True G256368
TU303445 lncRNA upstream 304520 17175684 ~ 17177230 (-) True G256393
XM_034311604.1 mRNA downstream 14279 16787801 ~ 16838649 (-) False si:ch211-210c8.6
XM_034311603.1 mRNA downstream 14279 16813384 ~ 16838649 (-) False si:ch211-210c8.6
XM_034311602.1 mRNA downstream 21067 16787806 ~ 16831861 (-) True si:ch211-210c8.6
XM_034312254.1 mRNA downstream 90235 16708190 ~ 16762693 (-) False cs
XM_026921164.2 mRNA downstream 90324 16708190 ~ 16762604 (-) True cs
XM_026920775.2 mRNA upstream 253855 17125019 ~ 17171019 (-) False rapgef3
XM_026920776.2 mRNA upstream 253855 17125019 ~ 17160334 (-) False rapgef3
XM_026920774.2 mRNA upstream 253855 17125019 ~ 17160333 (-) True rapgef3
XM_034311879.1 mRNA upstream 337721 17208885 ~ 17226734 (-) True LOC113530577
XM_026920713.2 mRNA upstream 859548 17730712 ~ 17735744 (-) True LOC113530575
XR_004579669.1 other downstream 21669 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 157898 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 1032774 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1365069 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 2148658 14699272 ~ 14704270 (-) False G255071
XR_004579680.1 other upstream 805401 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1021917 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 1414322 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 1637991 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 2066746 18937910 ~ 19064582 (-) False lrp1ab

Expression Profile