RNA id: TU303434


Basic Information

Item Value
RNA id TU303434
length 452
lncRNA type sense_over
GC content 0.30
exon number 1
gene id LOC113530386
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17175701 ~ 17188377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaattggccttgacgttccaatactttcacggGGGACTGTATTTATTAAGGTTCTCCAAATATGCATACTTTTCCAGAATTTATACTTTGTCTTTTCTCATAGAAAGTTTTCTCATTCTAGGTGAGTTGTCTTTGCCTGAGTGGTATTTTATCATtgttattacaatattatttgCATGTATAAGGGGAAAAGATGGCTGTACAGTATTTAGTTCACCAAATGTGactaaatgttatttttattgtgtattgatacacttttaaatatgaattattggTTAACTGTTTTATCTCCAGAATGAATTTATCAACATCAGTATttgtcatgtgatttttaaattgaatttactttttgaaaatcaaaaaggctttaaaaatgtgaaatatccATAATCCTGTGAAAATGCCTGGGTTTTTTCTAAAACAAGCTCACCAGTCCACTTCATTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303379 lncRNA upstream 66963 17106717 ~ 17108738 (+) True G256331
TU303370 lncRNA upstream 117204 17058192 ~ 17058497 (+) True G256322
TU303367 lncRNA upstream 120610 17054866 ~ 17055091 (+) True G256319
XR_003403182.2 lncRNA upstream 124770 17048077 ~ 17050931 (+) True LOC113530783
TU303360 lncRNA upstream 126609 17048904 ~ 17049092 (+) False LOC113530783
TU303458 lncRNA downstream 21527 17197679 ~ 17197916 (+) True G256405
TU303461 lncRNA downstream 64736 17240888 ~ 17241933 (+) True G256408
TU303485 lncRNA downstream 90358 17266510 ~ 17266732 (+) True G256425
TU303486 lncRNA downstream 105168 17281320 ~ 17282500 (+) True G256426
TU303487 lncRNA downstream 105168 17281320 ~ 17282500 (+) False G256426
XM_026920984.2 mRNA upstream 188 17172192 ~ 17175513 (+) True slc48a1a
XM_026920459.2 mRNA upstream 50750 17071137 ~ 17124951 (+) True itga5
XM_026920744.2 mRNA upstream 141425 17005065 ~ 17034276 (+) True csrnp2
XM_026920841.2 mRNA upstream 215135 16936562 ~ 16960566 (+) True tfcp2
XM_034311788.1 mRNA upstream 261629 16878658 ~ 16914072 (+) False pou6f1
XM_034312245.1 mRNA downstream 1696 17177848 ~ 17188377 (+) False LOC113530386
XM_026920352.2 mRNA downstream 13727 17189879 ~ 17194246 (+) True hrct1
XM_026920718.2 mRNA downstream 251150 17427302 ~ 17627058 (+) True plxna2
XM_034311900.1 mRNA downstream 266864 17443016 ~ 17627058 (+) False plxna2
XM_034311767.1 mRNA downstream 473162 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XR_004579712.1 other upstream 54760 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 667321 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 779489 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 780701 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 946295 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1703416 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1856765 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2302150 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3214657 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 3334092 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile