RNA id: XM_026920301.2


Basic Information

Item Value
RNA id XM_026920301.2
length 5208
RNA type mRNA
GC content 0.39
exon number 20
gene id LOC113530386
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17175701 ~ 17188377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggccttgacgttccaatactttcacggGGGACTGTATTTATTAAGGTTCTCCAAATATGCATACTTTTCCAGAATTTATACTTTGTCTTTTCTCATAGAAAGTTTTCTCATTCTAGGTGAGTTGTCTTTGCCTGAGTGGTATTTTATCATtgttattacaatattatttgCATGTATAAGGGGAAAAGATGGCTGTACAGTATTTAGTTCACCAAATGTGactaaatgttatttttattgtgtattgatacacttttaaatatgaattattggTTAACTGTTTTATCTCCAGAATGAATTTATCAACATCAGTATttgtcatgtgatttttaaattgaatttactttttgaaaatcaaaaaggctttaaaaatgtgaaatatccATAATCCTGTGAAAATGCCTGGGTTTTTTCTAAAACAAGCTCACCAGTCCACTTCATTTAATGAAATGATTCTTTTGAtcttaaagatttatttatttatgaaaaataaataaattgttcctattatttaagttattaaagaataaatataagGCTGCATTGGCTGACTTTGCCAACAAAGATAACACGCAAGACCATTTTAAGCTCCACCCTTCATATAACTTTACCAGTAAGATATCAGAATGAGGGCAATAATGATCTTGAAACCATTCTAAGCTTACAACACCTAAAGCATATTATCAAAAAAGGAACATCAGTGAAACAGGTAATGACCttttctttctgatttttttctgtcacttgtTGTCTTTGGCTCGCCTTATTAAATGTATTGTTGACATGTTAACAGAGTATGTAAAGAAATATGTACCTTTTTagtcatttgtttcattttgattCAGAAGTTTCATACACAGCGGCCGTATTCTTAACTTTAACCATAAACAATTGCATTAtgttacatatataatattttgtcatatGTATTTGGACCTGCTGTTCTGCCAAAGGAATGATGCTGGTTTACTTAATCTTTAACGCTCACTTTTCTCATGAAAAAATATATGCTTTAATCATTTTTAGACAATTACAGCTATAtacatgaaaatgtgtgtttccAATCACACAGTTCATATGTACTGGTCAAACAAATGCTCTCAAGGTCAGATAAGGACCTCTAAAAGCTGTACAAAAGAAAGTTTATCagcatgcacagacacacacaaaaaactatATTTACAGTACATCTAGATAATGTCCTAAGACATCCAATGTCTCGCCCTCTAAAAACTGGATATTTCTACATCTTATTTTGGCATATATATGAATTAACAAGCAAGTTCATTTGACATGCTCGATGTcactatattaatattattatatcacaTATGTATTGACTGATTTAGGTTTTAAGGTCTAGCTAGTGCGATGCATCAAGTTCGTCCTCACTATGCAACAGACCGAACAGCCTACACTCAATCAGATTTTGATGAGGAGTTtaacaggaagaggaggaactaTCCTTTGGGGGAGAAAGTGAGGAAAGTGTTCAGATGCTCCAGTGGGCGACTGAAGGGTCTTCTCTTCAGACATCTGCCAGTGCTCAGCTGGCTTCCCAAATACAATTTCAGACAGAAccttgtgtgtgatgtcatcagcGGAGTCAGCGCAGGCACGATTCAGGTTCCACAGGGCATGGCCTTTGCTCTTTTGGCCAACTTGCCTCCAGTCAATGGACTTTATTCgtctttctttcctcttattCCGTACTTCTTCATGGGCACAGCCCACCAGATGGTGCCAGGTACTTTTGCTGTGCTGAGTATCATGGTTGGTATAGTGTGTCTGCAGCTGGCACCTGAATCAGATTACAGCTACTTTAACACAACAATCAATGCCACTGTAGTATATGAGCAGAAGATGAATGAGGCTCGGCTGGCCATATCAGGCACTTTGGCTTGTCTGACTGCCATCATACAGATTGGTCTAGGCATGATGCAGTTTGGATTTGTGGCCATATACCTCTCTGAGTCATTTGTTAGGGGGTTTATGACAGCTGCAGGTCTGCAGATCCTCATATCTGTGCTTAAGTACATCTTTGGCATCACAGTACCACCATACAGTGGTCCTCTGGCTATAATTTATaCCCTCATAGACATATGCAAAGGCCTGCCCAGAACCAATATAGCCTCTCTGGTGTTTGCCCTTATCAGCTGTGTGGTGCTGATCATAGTAAAAGAACTGAGCACTCGCTACCGTCATAAAATCCCCTACCCTATTCCCATAGAGATAATTGTTGTGGTGGTGGCCACTGCCATCTCTGGGCCATTGCATCTGCCTGAGAAGTACCACATGGACATAGTAGGAGAAATCCCTTTGGGGTTTCCTGCTCCGATCCTGCCTAGAGTGTTGGAGTGGGGGGAAATGTTAAGTACAGCTTTCTCACTGGCCATTGTGGGATATGTCATCAATTTGGCCATGGGCCGGACACTGGCCACCAAACATGGTTATGATGTGGATCCCAATCAGGAAATGCTAGCTTTGGGCTTCAGTAATCTCCTGGGTGGCTTCTTTAAGATTCATGTGATCTGCTGTGCTCTGTCTGTCACACTAGCTGTGGACAGTGCAGGAGGTTCCTCACAGTTTGCCAGTCTGTGTGTTATGATAGTTGTCATGGTCACCATGCTGGCTCTGGGAGCTTTTCTCAAACCACTCCCCAAGTCAGTGTTAGGAGCTCTCATAGCTGttaatctgaagaacacacTACTGCAAATCTCGGATCCATACTATCTCTGGAAGAAGAGCAAACTAGACTGTTGTGTATGGGTTGTTTCTTTCCTGGCAACCTTCTTCCTGAGTCTGCCTTATGGTGTTGCTATTGGGGTGGGCTTCTCCATTCTGGTAGTCATTTTCCAGACTCAATTTCGTAATGGCTCAGAAGTGGCTCAGGTCTTGGATACAGACTTGTACAAGAACCCTAAAGTCTACAATAAGGTAAAAGCCATTGAAGGTGTGAAAATAGTGAGTTACTGCTCACCTCTTTACTTTGCCAATGCAGAGATATTTCGCCGGAAGGTTATCAGAAAAACTGGGCTTGATCCAGGCAAGGTGCTTCTGGCCAGGAAGAAGTTTCTGAAAAAAcagcaggagaaagaaaaacaagaaataaaagccAAGCAGGATCAGGAGAAAGCAGCTTCCAGAAAGAGGAAAGTGAGCTCACTAGTTACCATGAAGATGCAGACTGTCTCACAAATTGATCTGCAGAGTGACTTTTACACCATTGGTGTAGGCAGCGATAATATGCCCACGAGTTACATCAATCCATACTGTGATATCATGAACCCCACTGACCAGCTTCCAGAGCCCGAGGCTGCCAGCTCCCCTCCTGTTACGATGGAGATGCAACCTGTCCCTTTTCATACACTTATCTTGGACCTGGGGGGAGTCTGTTTCATCGACCTGATGGGCATTAAAGTTCTTACCAAGATGAGCAACACTTATAGTATGCTGGGGATTAGCCTATACTTGGCAAATGTGCAagctcaGGTATTTGAGGAGCTGGAGGCTGGAGGAGTGTTTGAGGAGAGCAGTATTACTCCTAGTCACATGTTCTTGTCAGTCCATGACGCAGTCCTGTTTGCCCAGCGCAAGTCACTGACTCCCGGAACTATGGCAGAGGAAGACAGGGAAAGGGTAAAACTGGCATTTGATATAGAAGAAGAGGAACAGGATCTGGAGCAGGAACTTTTCTGACAGCTCAGAAGAATATTTTCGAAGTAGCTGGTTTGCCTTGACAGCATTATCACATGATATTTTGGTTTATTCAGTAAACTGCTGTATACACAATTGATTAGTCTTGCAAGATCTGTTGTAGCACCTtcagttataaaaataatttcatagtGTACATGTTGTTCATCTATTCACCAGTAGAGGGAAGAAATCCATAACCTGAAGACAATATCTGCAGTATACTGTAATATGACTGCTTTGTGAAAAGATTGTAATTTGGTAAAAATCcatacaaaaaaattttttataatatacttttattatatacacacagcctaattatttacacttttaagACTAATCACTCAATTTTTTAGACTAAGGGACATTTATAAGTGTCAAAGTTGTTAGTTTTAGATAAAGCAGTGTTCTTATTAACATTTGAAAGAAGGATCATAGTTTTGCTTTTGTCCAACAATGAAGGGCTACACACCGTTTCAGGAGATGGTATTGTGCACTTGGTGTTAGTTAACACTTGGGAATAATTCATCAGGAAGTAAAAGAGAAACTAGGGAAAGCTCCTAAGCTGCTTAATTGTCACACTGCACGGCTAAGACATCCAAATCTGTCAACGCGGTGTGTTGTGTCTATATTTGGATGTAATGAAACTGTAAACTGCTGTTATACAACAAAGATGTAAGTAATTGTAATgctattatacacatttttgtttattgtatacTGCTGTGTACCATTCTGATTACATTTCTTGCAATAATAATattggctctgttatgctgtggaaGGCATTTTGCTGTCATGATTTGTATCCACTTGTCCCCTCAGAGCACAGTTTCCATACCCTAAACCCGGACTACCCCCtttcctgcacattttaatgttttctcccAACACACCCACTTTAACTCAGGAAAGTGCAGTTAATTAGCTTATTAGCTGAATCATGTGTTTTGGAAAGAAGGAAAACACTACAAAGTGCAGGACAGGATATCCTCAGATCTCAGCACAGTTGAACACCTAGAGTATTGTAGTTTCTGGACTGATGGCATTCAGTTAGATAGCACTCTCCACAATCATCATTGAATGTAGAATGTGTGGATGTGTAGAATTTATGCCAAGGCACATTGAAGCCGTACAGTTGGCTTGTGGTCACCCAACACCTTAATAATAcactttatattgttttttatattaatttgtcacccatctgtatattttaaaagcCTTGGTGAGTAGTGTCTCCCTCTAGTGTTACTTTGTCTATGACACACTATGACAGTTAGTGTTAATAAGGTAGTGTCAATAAGACGTTGTGAATTAATGCCTTCTTAATATGTAGTGGAAATTTCAAAAGATAAACATAATGACACCTTTTTATAAGGGGACATTGCAAGATTATCAGCACTACTGATTGGTTtcaattaaatgaatgaattatatcTGAAATTTAGGAAACATTTATGATTACATACTTATTCTGACATTGAGGAGGGCTTCTAGTGCATTTAC

Function

GO: NA

KEGG:

id description
K14706 SLC26A9; solute carrier family 26 (sulfate anion transporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303379 lncRNA upstream 66969 17106717 ~ 17108738 (+) True G256331
TU303370 lncRNA upstream 117210 17058192 ~ 17058497 (+) True G256322
TU303367 lncRNA upstream 120616 17054866 ~ 17055091 (+) True G256319
XR_003403182.2 lncRNA upstream 124776 17048077 ~ 17050931 (+) True LOC113530783
TU303458 lncRNA downstream 9302 17197679 ~ 17197916 (+) True G256405
TU303461 lncRNA downstream 52511 17240888 ~ 17241933 (+) True G256408
TU303485 lncRNA downstream 78133 17266510 ~ 17266732 (+) True G256425
TU303486 lncRNA downstream 92943 17281320 ~ 17282500 (+) True G256426
TU303487 lncRNA downstream 92943 17281320 ~ 17282500 (+) False G256426
XM_026920984.2 mRNA upstream 194 17172192 ~ 17175513 (+) True slc48a1a
XM_026920459.2 mRNA upstream 50756 17071137 ~ 17124951 (+) True itga5
XM_026920744.2 mRNA upstream 141431 17005065 ~ 17034276 (+) True csrnp2
XM_026920841.2 mRNA upstream 215141 16936562 ~ 16960566 (+) True tfcp2
XM_026920398.2 mRNA upstream 261635 16882139 ~ 16914072 (+) False pou6f1
XM_026920352.2 mRNA downstream 1502 17189879 ~ 17194246 (+) True hrct1
XM_026920718.2 mRNA downstream 238925 17427302 ~ 17627058 (+) True plxna2
XM_034311900.1 mRNA downstream 254639 17443016 ~ 17627058 (+) False plxna2
XM_034311767.1 mRNA downstream 460937 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XM_026920653.2 mRNA downstream 460937 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XR_004579712.1 other upstream 54766 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 667327 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 779495 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 780707 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 946301 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1691191 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1844540 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2289925 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3202432 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 3321867 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile