RNA id: TU303461


Basic Information

Item Value
RNA id TU303461
length 1046
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G256408
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17240888 ~ 17241933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATAGAATCCATAGAAAACTGCAGAATTGAAACAACAgtccttttttaaatgtacttcaTCACACTGCAACTCAAGGGACCCTGTTAAAACAAAAGCCATAttcttttgtaaataaataaagaacaaaattgAGGAAAAGAGTATTTAACCTGCCAGGGCATAACAGTTTCTTCTGCTCAAACTAtttaatagaaaaacaaaatctttttaaagCAGTCAGGCTGGtgcaatgtttaatgtttatagtAGAATTTGTTTGGTGTGTTCTGAGAGAGTTTTGGTGAGTATGCAATCTGCAACCTGGCCTCTCCCTAGAGCGAGCCCAggcctgtctttctctctgtgcccCTGGGCCATGGAGGCATCATGGCGTATTCTCTACTGCCTCTGTCACAGTAAAAAGCTTCAGCACTCCTGTAAAGTGAAATCCAACACTTCCATCTGCctactaccacacacacacacacacacacacacacacacacctgcatggGCTTAAAAAGGCCCACACCTATGAGGTCATGTTGTACTTTCTTTAACGGATTAACTCCCAGTCCTCTCTCTGGTGGCAACATACATCTGACTAcattagtttcactgtatttGCTGAATTATGTATAGTACATATTAGATAATATGCTTTGAGATGAATAATAAGCTGAGAGTTTACGGAGCTCACTAACTCCATGCAGTTGGTCTAATACACATTAATTACCTGTGAATAAAAGTTGGTTAACTTTCAGCATTTGAGCAATTatctttttctcttcatcttttCTTAAAAGCCATGACTAAACATTGTGAAAACAAATTGTTAAAGTGGTttgaaaaacattgtttttaaaaaccatAGATACAGATCTACTCTGATAGGTAATACACCTTGGCAAGTAATTTACACTCACCTTTTTAGATTAGATCCAGTTTTGAAGCAGGAAATTTGACACATATCAGACCTACTCCCAAAACCACTTCCCAAAAAAGCAACAGACCCTCATTAAGGTAAATCTGTAGGACATAAAGAAGGGTAGATGAGCAACAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303458 lncRNA upstream 42972 17197679 ~ 17197916 (+) True G256405
TU303434 lncRNA upstream 64736 17175701 ~ 17176152 (+) False LOC113530386
TU303435 lncRNA upstream 64826 17175701 ~ 17176062 (+) False LOC113530386
TU303379 lncRNA upstream 132150 17106717 ~ 17108738 (+) True G256331
TU303370 lncRNA upstream 182391 17058192 ~ 17058497 (+) True G256322
TU303485 lncRNA downstream 24577 17266510 ~ 17266732 (+) True G256425
TU303486 lncRNA downstream 39387 17281320 ~ 17282500 (+) True G256426
TU303487 lncRNA downstream 39387 17281320 ~ 17282500 (+) False G256426
TU303512 lncRNA downstream 86452 17328385 ~ 17328590 (+) True G256448
TU303523 lncRNA downstream 162206 17404139 ~ 17404370 (+) True G256459
XM_026920352.2 mRNA upstream 46642 17189879 ~ 17194246 (+) True hrct1
XM_026920301.2 mRNA upstream 52511 17175707 ~ 17188377 (+) True LOC113530386
XM_034312245.1 mRNA upstream 52511 17177848 ~ 17188377 (+) False LOC113530386
XM_026920984.2 mRNA upstream 65375 17172192 ~ 17175513 (+) True slc48a1a
XM_026920459.2 mRNA upstream 115937 17071137 ~ 17124951 (+) True itga5
XM_026920718.2 mRNA downstream 185369 17427302 ~ 17627058 (+) True plxna2
XM_034311900.1 mRNA downstream 201083 17443016 ~ 17627058 (+) False plxna2
XM_034311767.1 mRNA downstream 407381 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XM_026920653.2 mRNA downstream 407381 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_034311768.1 mRNA downstream 407381 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XR_004579712.1 other upstream 119947 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 732508 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 844676 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 845888 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 1011482 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1637635 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1790984 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2236369 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3148876 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 3268311 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile