RNA id: TU303523


Basic Information

Item Value
RNA id TU303523
length 232
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G256459
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17404139 ~ 17404370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCTGTTGTGTTCGTTTCGGCTAACACTCATAGTGTTCCCGGTCATTTTTGACCGGGATCATTTCATTCCATTATAAATCcacaataatacatatattatcACCTAATGTTGTATTAGATCTTTTTATCAACTTCAGCTCTTGGAGAACATTACAAGTTTTGAACTTGTATTTGCTGTGTATGTCCTGCAGGCCACATTTACCTGAGCTCATACCACTcgtttttttaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303512 lncRNA upstream 75549 17328385 ~ 17328590 (+) True G256448
TU303486 lncRNA upstream 121639 17281320 ~ 17282500 (+) True G256426
TU303487 lncRNA upstream 121639 17281320 ~ 17282500 (+) False G256426
TU303485 lncRNA upstream 137407 17266510 ~ 17266732 (+) True G256425
TU303461 lncRNA upstream 162206 17240888 ~ 17241933 (+) True G256408
TU303531 lncRNA downstream 29196 17433566 ~ 17435773 (+) True G256466
TU303542 lncRNA downstream 263347 17667717 ~ 17670603 (+) True G256475
XR_004579653.1 lncRNA downstream 298717 17703087 ~ 17729023 (+) True LOC117599208
XR_004579654.1 lncRNA downstream 298717 17703087 ~ 17729023 (+) False LOC117599208
XR_004579655.1 lncRNA downstream 298717 17703087 ~ 17708195 (+) False LOC117599208
XM_026920352.2 mRNA upstream 209893 17189879 ~ 17194246 (+) True hrct1
XM_026920301.2 mRNA upstream 215762 17175707 ~ 17188377 (+) True LOC113530386
XM_034312245.1 mRNA upstream 215762 17177848 ~ 17188377 (+) False LOC113530386
XM_026920984.2 mRNA upstream 228626 17172192 ~ 17175513 (+) True slc48a1a
XM_026920459.2 mRNA upstream 279188 17071137 ~ 17124951 (+) True itga5
XM_026920718.2 mRNA downstream 22932 17427302 ~ 17627058 (+) True plxna2
XM_034311900.1 mRNA downstream 38646 17443016 ~ 17627058 (+) False plxna2
XM_034311767.1 mRNA downstream 244944 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XM_026920653.2 mRNA downstream 244944 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_034311768.1 mRNA downstream 244944 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XR_004579712.1 other upstream 283198 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 895759 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 1007927 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 1009139 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 1174733 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1475198 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1628547 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2073932 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 2986439 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 3105874 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1678296 True 232 lncRNA 0.34 1 NC_048581.1 57641249 ~ 57641480 (+)