RNA id: TU303656


Basic Information

Item Value
RNA id TU303656
length 2693
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G256578
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17673279 ~ 17676261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAAACAAGTTCTTCAGTTTATAAGAATTGTAGTACACAGACCACAGACCCAGAACAGTGGAATGTTAAATATAGACGGAggatgaattaaataaaagaacagaACACTACTAGTCATGGCTGCCATGCTATAACAATTGATAGCATTACGCCTATTGCAATGGGAGTCCACGTACTCATTAAGCCAACTGCGGGACTCTGCTCTGTTCATTGTTTGCCTTTGGCTGATTGGCAATTAACAATCAataattgcattaaaataaaagaagaaggaCAGATTTCAGGATAGCCCACTACAACTATGACATTCCAGAGATATTACAAAAGAGCATAATACTGGTTTAGGACAAATATACAATTCCAAAATGTGTCTTGGTCCATTGAAAAGGTCATCTTCATCAATCACCTATAAGCCCTGGTTGTTTTACAGGATTTTGAAGTCCGGTGTGAGCTGTGGTTTGCAGTGATGAAAAGGAGTTCATGGTAATTGTTAGCGAATGAAGTCCAGCACCAAACAAATGCTGTGCAATCACCTTAACTCTCCAAGTCATCACATTGTcacattgtttaataaacaaagGTTGAGCAGTACTGTTAACATAGGTACACATTCTTATATCAACCCAATGAAATATGGCATCACTCATATTTATAATTCACACATGGCATCTGAAACTTTAGAAATACAATTCACACATGtgcataaaaaaagaacaagcaaACAGAACTCCCATGTGATTCAATTTGATCATTTCTTCATTGGATGACCCAAGAAGAAGTGTGCTCTTGAACAGAGAGCCATGTGGAGGGTTAGGAAACTGTGGAACATTGGGACACGAACAGGGACTAACTCTGTCCAAGTCTGTATACACTTATGGAAGCCAGCAATCAATCTTATTGAAGGACACCCACCCAAGACCATTATTCAACATCAGCTCAGAGAGCCACAGCACTTGCACTCTTCACATTATAATAGACTAGcattatataatactatatcATATAACaacattatgtaatattttaactgctgtttttttatcATCACCCAAACaaccaaactttatttttaacttaattttttatgtagaaGTTAACAACTAGATATTCATAAAAGGTTTGATTGTGTGTGGGAAGGGTAAAGGATATAACCAGATAAAAAGATAAGAACCTGGGGTGGGTTTCCCAACAACGATGAATCTTAGCGAATAACAAACAACTTTAAGAAAGACATATGTTAAGTATGAGCTTATTTAGTGAGTATTTCCTGGGAGCTTTCGTTATGAGAGATTTAAAGATTGAGTTGTAAGTAGTTCTTTGTTGGCTCCGCCCACTCCGAGTCGAGTCTGCACACCGCACGAGTCAATAGTCAAACATTCGATTCACAGTCTGGAGGTAAATTTTTTAGATGAATCAGTGACTTTACACGGCATAAACAGATGTTGATGTTTGTAAATAACCATTTACAACAGAAATTACGTTTGTCTGGAAGGGCAACGctgaaaaaatgcaatatattgtcagatttaagagaaaatataacGTTTACATTAAATGTACAGTTTACATATTGTGGTCCTGGAAGTGCCTGATTGGCTTTTAGCACTTCATTATTCAtggcagtgcattctgggatatCTACCCTCTCTGTGTAGTGTTTTATTTGTGAAATCTTTTGTTATTATGCTTAAATTTTCTGAATTTTCTTTCATCAGTGCAGCTGTTTAGAGATGTTCAGTTACTCATCACACAGTTATTGCTTATGCTAGGTTTAATCTAATCTTTCAGCTTGACTTATGTGGAATGAGTGTGAGCTGTTACCAAATGCAGTATAGTAGTCTAGTGGGTAGCGTCACTGCCTCTCAGCTCCCGAGTCCTGTGTTAATGCAAATCAATTCATTCACATGAACacagttttaaatgcagttttgtaTAGCTAACATGATTAATAAAGAACAACGTgtaaccccacacagacagtgaaCGAAGCTGTGGTTTGAATCTACTACACTCTGAACACTCACAGATGCTAATTAAGCAAGTTAACACCAGGGCAATAGATCACAGTCACTCCATACAACTGTGAGGCttttttgcataaaaatgaGTGGCCTCTGCCTTTTTGAGGTAGAACTGCATGCAGGCTCCAAATAACCAAGTATTTCATGAAAAACGAATAGGTCAGGTTACTCATTAATTTACAAACAAGTTGACGCACTACATTAGTAAAGAGTTTCGGTAAAGGcttgttaattaaagaacattctTATGAACGAGATAACGATGTACTTAGCATTACAAACGTTTTGGGAAACCCACCCAActggtcatcatcatcatcaagagCCATTTCcaaattacattataataactATCAATAACCCTCATTATGTACTAATTGTATTGAGATAAagagagtattttttttttcagttccctTGTGTTGTTTGTAGGCCTGGGATGGTGAACTTTGACCCAGAGCCTGTGTAGTTGAGACGGACTCTCACAGCTCAGTGTCAGCTTTGGTGGTAGAGTGACCATTGGTGGCAGCAGGAGGATTTTGGATCTTCACGGCTTCTAGGGACTCGCCATTCTGGCTTGGTTTCTCCGAGCTCTCAGGTGGGTTCAGAGGAGCAACAGACACCAGAGTGTTGCCCTGGTTATCTTCATCAGTCATGTATGACTCCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579716.1 lncRNA downstream 3650 17666668 ~ 17669629 (-) True LOC117599248
TU303646 lncRNA downstream 44818 17626319 ~ 17628461 (-) True G256569
TU303643 lncRNA downstream 44818 17626554 ~ 17628461 (-) False G256569
TU303641 lncRNA downstream 49857 17623185 ~ 17623422 (-) True G256567
XR_003403191.2 lncRNA downstream 350139 17321422 ~ 17323140 (-) True LOC113530886
TU303681 lncRNA upstream 22937 17699198 ~ 17699397 (-) True G256598
TU303696 lncRNA upstream 45462 17721723 ~ 17721933 (-) True G256613
TU303705 lncRNA upstream 55836 17732097 ~ 17732463 (-) True G256622
TU303706 lncRNA upstream 57545 17733806 ~ 17734049 (-) True G256623
TU303780 lncRNA upstream 114380 17790641 ~ 17790907 (-) True G256689
XM_034311879.1 mRNA downstream 446545 17208885 ~ 17226734 (-) True LOC113530577
XM_026920775.2 mRNA downstream 502260 17125019 ~ 17171019 (-) False rapgef3
XM_026920776.2 mRNA downstream 512945 17125019 ~ 17160334 (-) False rapgef3
XM_026920774.2 mRNA downstream 512946 17125019 ~ 17160333 (-) True rapgef3
XM_026920854.2 mRNA downstream 802115 16852928 ~ 16871164 (-) True dazap2
XM_026920713.2 mRNA upstream 54451 17730712 ~ 17735744 (-) True LOC113530575
XM_026920241.2 mRNA upstream 71021 17747282 ~ 17754344 (-) True taf8
XM_026921214.2 mRNA upstream 79331 17755592 ~ 17756555 (-) True g0s2
XM_026920975.2 mRNA upstream 89948 17766209 ~ 17778850 (-) False camk1gb
XM_026920974.2 mRNA upstream 89948 17766209 ~ 17778675 (-) True camk1gb
XR_004579669.1 other downstream 842020 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 978249 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 1853125 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 2185420 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 2969009 14699272 ~ 14704270 (-) False G255071
XR_004579680.1 other upstream 304 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 216820 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 609225 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 832894 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 1261649 18937910 ~ 19064582 (-) False lrp1ab

Expression Profile