RNA id: XR_004579653.1


Basic Information

Item Value
RNA id XR_004579653.1
length 5203
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC117599208
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17703087 ~ 17729053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCGGGGTTCAAATGTGGCGCTGTGGAAATTCTGATGCGCTCTCACAAGGTGTTTCGGACATCTCGGAAACGCTGAACGGACACTGAAGCAGCGGCGCGACGACGCTCTAGAAGTAAATAAGCAAGTGAAATGACTGTGGAAGTGCGTAAAATACGAATAACACGGTTATTCAGgggcACGGAAACGATTGCACTCATCAGTCCTTCTTCCAGGTCTGTCTATCTTCAGTTTCTGTGCTATTGTTGAAAAACAGGTGTACAGAAAGGCTATGCATACTAATGTAATGACCGAATCAGAGTTGGAACAAATCCACAAGCATGAAGTCTCATATTTCAAAGAACGTGGACATCTATTAGTTGTGTTTTGGAACGTATCCATAGAGTTGAACGTTGTTGCCCTAAGTAATGTCAGTACATTACACTTCAGAAGCTACTCTTCTGAGCGAAATATTGATGATACAAAATTGAAAGGCATGAAGAGGAAAGAAATGACATGTGAATGCATaatctggtaaaaaaaaaaagaaagaaagaaataaaacaaagctgTTAATAGAGTATTGGAATTAGTCtggtgacatttttaaattcacaaCGTTAGCAATTAATAGAACAGGAAAGAACAAAGCAGACCGTTCGGTCACGTCTTATGAAAGCTTGTTGCTTCCTCTGTTCTTTGACGCAtttcatgttttacagttaatcaAGAGTGAAGAGTGCTCCCAGGCACACGGGATATGGCACAAAACCAAGGACAAGTGGGAGACACCTGACCAGTCAGCCAGTTCTGTCAGGACTGATAAAAGGAATGTTTTGCATATTCCTGAAGAATCATCTCTGGGTGGAGACAAGAGAAATGTAGAGCGAACAGATGAGCAGGAGGACATAAAGAGGAAGTGGAGAAATGTGACTCCTCTTGGAAGCTGGTTTCAGATGGTGGCTTAGAGTGTTTGTCAGTGATCTAGCACCATTTGAAATCAGTGTTCTTGGGGTGGGAGAAACATCCTTCTGTTTCTAAAAACCTTCTGtattgtttctgtgttttctctaaATTCTGATACATGAATTTGAAGAGTCAAGTATAATTTTACTACCATGTTATGAATCCTGTGCCTAAACATCAAGATCATGTCCTGTCACCAAGGCTGACCGATTTCTTCTGGTGTTCAGAGTCTTTTGGGGTTTCTAGCACCATTTGAAATCGGTTACAATGAAGGACAGAAACCAGCATTTGAAGGAGCAACATGAATCTTTTCTGCTGCCTACTACCTTACTGAAGAGATGTTTATGCAAAGTGGTAAGTTGTAAAACCATTAGTTGGATCAATAAATGCCACAGGTAGGaagaaatttttaatttatcaaatcAGATTAGCATTCAGATATACATTAATTTCCATGTTATTATATGAGCATGTATCAAATATTTCTCAATCATATCTCTTCATGTCATCCCACggttttaaagtttaattaagaCTCTCACAGGGACTTTAACAAATATTCACTAAGTTCTATAATTAATCTGAAAgctgtaaaaataattattgattcttattatttaaaactctACTTCCATAGACCTACCTCATTGCAAAACAGTATGTTCTACTAAGGTTCGCGCCAGTTCCACACAACGCTCAAGTTTATATATTCCACTGTACCTAAGTAGCTACAGTATATGGACAAATATagatggacacctgaccgtcacacctaTATGAGCTCGTTGGACATCCTATTCccaaaccatgggcattaataagGAGTTAGCCCCCCCATTTGTGGCAATAGCAGCCTTAACtgctctgggaaggctttctacaagaTTTTGAAGTGTGTCTATGGGactttgtgctcattcagtcaaaagagcatttgtgttgttaggcactgatgttggacgagaaggcctggcttgcAATccacattccagttcatccctaaggtgttcggtggggttgaggtcatggctctgtgcagtccactcgagttcctccacaccagatTAATCAATCACACAGTCCAGTCCCACAGTCCACACTGCACAGTCCTGCTGGAACAGGAGAGCCATGGATACCCATTTCATGATGCTCCCAAAGCACAGTTCTTATGTTGACGatgcttccagaggcagtttggaactctgtagtgagtgatgcaacagaggataggctattttttttttatttattttttttaattacacactaCGTGTTTCAGCACTCAACAGCCACTCTCTGTGCGTGGTCTACTGCTTTgtggctgagctgttgttgctctATGGCACTTCAACTTCACAGTTACAACTTACAGTTGACCGGGCAagacaggtggcatcctatgacagtgcTACGTTTAAACTTACTGAGCTCTTCAATACAATCCATTCTATTGCCAGTGTCTGTCTATGGAGATTGCATGGCTATGTTCTTGATTTTATGTACCTGATAGCaatgggtgtggctgaaacTTAATAATTAGGtggggtgtccacatacttttgcccatatagtgtacagCCAGCTGAAAACCTTGAGCAAAATTCACAGTTGACAGTTGGCAAAACCACTTGAAAAACAgagatgtttttcatgaaaaaaaaggaaaaagaaaagctgcatCTAGTAGTATTTTGATGCAGAGAGCAGGATTGTTGTGGTGTCCGAGTTGGTGGCAATAGGACTAAAAAACCATCTCAGGAGAGgtctgtttttactttcatgcaggacAGAGCATCATGCAGTACAACTCCGTTAAACGCCTCAAACTACACAAATGTGGTACTTCCAGTTTGCAGATAAACCCTGTTTGAGCCTGCGAGATTGTATtgataatattttctcttacaATTTAAACACTGTATTGCATATGCTAGGTTTACACTGTACAAATTGAACATCATATTAAGACATAATTCCCCAGAGCTTTGCCTCAGATTTTGACTCTAAGTATTGCGTAAGACAGTCAATGGAAACTAAGTGGAGAGTAAATAGCTTTATCCTAGATATTGTCTAAAGAGTTCAGGAGAAGATAAGTCTggcatttaaaatttaatttaatctcatTTGTGTAGTGCTTTATACAAGATATTGTCAGAATGCAACTTAACAGAAATCTCATTGTAGATCTAGCCCAAACCTTTACCAGGATGATgctgcccctgtgtacaaagcaagctccataaagTCCTGGTTTGCCAAGGTAGGTGTGCAAGAACATGAGTCAACCAAACTGaatgggatgaactggaactccgaCTGCACACCATGCCTTCTGACTGACATCGGAGCCTTCCCTCAAttatgctcttgtggctgaatgggcaataGCCACATTAAGTCCATATTAATgaccatggttttggaatgggatgtttagaGTCAGTTTctagtgtccacaaacttttgaccatgtagtgtaGCTGTGGAAGAGTAAAGCCAAACATTACTGGGTGTCGAAagaatgttcagtatgagcatattgcGAATATGAGTCCTGGAATGAACACAGGACAGTTTTAATTATTGCAAAATCACACCATGATTTCTAGCCATATGTGTCATTAACAGATATCAACAGTGTCAATGGTGATTCATTCACCCAGTATCCAAGAGTTCTGTTTTGTAAAGATTACGTTTCAGATGATGATGAGTCTTCATCCAGAAAGAGATCTGAAAGAGAGTCTTCTTCTGAAACACTTAGGAGatggaagaaggaaaagaagcaCAGCATAACAGTGATGTGGATCACAGTCATGTGATCAGATCACTGACCCCAGACATGTAGTGtataaagtgaaaaagaagaTAAAGTGAAGCTTCAGATCCGTAACCCTAACCAAGATAAAGCAGAAGACAATGAATGATGATTGAGAACAAGAGTGAAACAAAAACTGACTTCTGGGGAACTCCAGTAATAAGGCTGTGAGATAATAATACTGAACCTCTCCATGCTATCTGATAAGGACTAAAGATCCTGTAGATATATCAAAAATGAGGTCAGAGCAAATCTTCGGATGTTGAAGTCAGCAAGAGTGGAGATTAGAATCTGTCAATTCACTGGTCTAGAAGGATGAGGAAGTAGAGTTGTCTGGCTTTGTGTGAAGTTTCAATGACTGGAATGTGAGTAACTTGAATGTATAGAACATTAGAAACACACTGTGCACTTGGGCTTGATGAATGAAGAATGTCTGAATGTTGGTGACCTTTCTGTGCAAAGTTCATTATAAATTCACTAGAAGAGAACAAGGAAGAAAATGATGTAATCACTGCCTGACACACTGTAATATTTGTAAGACAGTTGCATTTTCTCAGTTTTCCCTTAGCTCTGCAAAGGACAAGATAGTGATGTTGAAATGTAAGAGAAGATGGGGAAAGGATTTGAAGTTTCTTATGAATGTAAGAGTAATGGGGGCGGGGGGCTGAGTGGCATTGATGACACAAAGAAATGATCTGAGATGTCAAGTGGAATAGTCTGTGAAAACAAGGGCAAGAATGTTGCCAGCTTAATGGATTGGCCAGGACAGGATCTACAATGGTGGAATACAGTAGTTTCTCTACCTAATGATTTATGACAGTGGACCATTAGGGTGTGCCCCCTTTATTATTTGTGTCAAGTAACAAAAAGTGTGCATGCATAAAGCAAAAGGGTCTTTTACAGTTGTCAGTCAACTTGAACCCTACCTATCAGTTACCTCATCAGCCATGCTTGGAGGAAACCTATAAGGACACGGGAAGAACAAGCAAAACTCTACATGCCGTTATTGGACTTTGagatcaaacccaggaccctAACGTGAGGTAAACCTTTAATGAGCAAGGTAAACAATTCCACATGAAATATTCTGTTTCTCAAAAAACTCAAAGGTTGTCCAGATCCTGATGACATTTTATTGACAGTAAGAGAATGGCTTCAGCAAGGGCATTTGcaaattttgaaaatatctGGCGCTTAAGCCAAATTGCCACGGGCCtgaatttttttacttttcaactTAACATACATcatcttaaaataataataataataataataataataataataataataataaacatcctGCAGTTTGCATGGGGTCTGTGTCACAAGAcatgtattatgtattttgcGACTACATAAGACTGCACTATCTGGATAATGTAGGAATTTTAGAAAATGTTCAAGGGAAATAAATCTAaccaaaatggggaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303542 lncRNA upstream 32484 17667717 ~ 17670603 (+) True G256475
TU303531 lncRNA upstream 267314 17433566 ~ 17435773 (+) True G256466
TU303523 lncRNA upstream 298717 17404139 ~ 17404370 (+) True G256459
TU303512 lncRNA upstream 374497 17328385 ~ 17328590 (+) True G256448
TU303486 lncRNA upstream 420587 17281320 ~ 17282500 (+) True G256426
TU303711 lncRNA downstream 18131 17747154 ~ 17747710 (+) True G256627
TU303749 lncRNA downstream 61488 17790511 ~ 17790906 (+) True G256660
TU303824 lncRNA downstream 148590 17877613 ~ 17878486 (+) True G256726
TU303869 lncRNA downstream 214128 17943151 ~ 17943355 (+) True G256771
TU303870 lncRNA downstream 215872 17944895 ~ 17945099 (+) True G256772
XM_034311767.1 mRNA upstream 26783 17649314 ~ 17676304 (+) True si:dkey-261h17.1
XM_026920653.2 mRNA upstream 26783 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_034311768.1 mRNA upstream 26783 17649314 ~ 17676304 (+) False si:dkey-261h17.1
XM_026920718.2 mRNA upstream 76029 17427302 ~ 17627058 (+) True plxna2
XM_034311900.1 mRNA upstream 76029 17443016 ~ 17627058 (+) False plxna2
XM_026920242.2 mRNA downstream 10248 17739271 ~ 17746529 (+) True si:ch211-66i15.4
XM_034312049.1 mRNA downstream 10248 17739271 ~ 17746529 (+) False si:ch211-66i15.4
XM_034312065.1 mRNA downstream 464174 18193197 ~ 18240912 (+) True LOC113530861
XM_026921224.2 mRNA downstream 497840 18226863 ~ 18240912 (+) False LOC113530861
XM_034312066.1 mRNA downstream 500054 18229077 ~ 18240912 (+) False LOC113530861
XR_004579712.1 other upstream 582146 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 1194707 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 1306875 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 1308087 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 1473681 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1150545 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1303894 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 1749279 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 2661786 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 2781221 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile