RNA id: TU303854


Basic Information

Item Value
RNA id TU303854
length 1311
lncRNA type sense_over
GC content 0.39
exon number 2
gene id kcng1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17884243 ~ 17913277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctctgtGATGGCTGGCACACCTGCCTTGTGCCACAAGTCTCCTGGGTAGgctcccctgcaaccctgtgtaagATAAGTGGCATGGAAGGTATTCATGGATCAAAGGTATTCCAAAGACTGttagtatacactatatggccaaaagtatgtggacacctaaatATTCCCCCATATGAGGGTTAAACATTtgccacaaaacacacaattgtctagaacgtctttgtattctgtagcattaagatttcccttcaagAACTAAGACATCCAAACATATtgcagcatgacagtgccccgtgcacaaagtgaggtctgtAAAGTTTGCCAAAGTTGATATGGAAGAACTAGAGTGACCTgcgcagagccctgacctcaatcccactgaacacgttTAACGTTTAAAGAttaactgcaccccaggcctcctcgtctGACaacagtgcctgacctcactaatgctcttctgactgaatgagcacaacagccatactccaaaatctagaggaGAGCCTTCCCAAGaaagtagaggttattataacagcaaaaaggggggactaaaactcaaatgggatgttcaaaaagctcATATGAGTGTGAGGGTTAGGTTTCCACAGATATTTAgcccatatagtgtgtgtgtgtgtgtgtgtgtgtcccaaatTTGAAAATATGCCATCccaaatgtcattaaaaatgattttcactCAGTTTTCACAAAATGGTAAGCTATGCTTCTTTAgaatatgataataatatttttccatCACACATGTAGGTAGTCAACACTTTGAGGATCATGTGATGgggtatttttgttttattaatggaaGAAAGCTTAAACAAAGTGGAAATTCAAAGAACTGTCCTGATATATCTGAATTCACCCtattaaaatgcacattgtaTACATTGTTCTTTCTAACCGTCACAATTCCCAtgatattaaaaacacaaaggaGGGTCCCATGTTAAAGTAATTAAGCAAACTACTTATTCCTTGAATGGTTCGAACCTGTaatctattatattatatgtacgTATTTATTCCTCATAATATTTCAGAATATTGCCAACTTCAAAGCACGAGTTTAAATCTAAAGAAAGTTCCTGTCCTACACTATATGCTATTAAAGCGCAATGCCCTTAAGCTACAGTAAAGacattaaacacaataaacacataaaGACCAACATCATTGGTCTTCTCTATTACTGTTGTCAAGTTTCCAAAATGACTTCAGCATTCACATTTTGTATAACGACTTGAAGGGTGATTTctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303780 lncRNA downstream 93336 17790641 ~ 17790907 (-) True G256689
TU303706 lncRNA downstream 150194 17733806 ~ 17734049 (-) True G256623
TU303705 lncRNA downstream 151780 17732097 ~ 17732463 (-) True G256622
TU303696 lncRNA downstream 162310 17721723 ~ 17721933 (-) True G256613
TU303681 lncRNA downstream 184846 17699198 ~ 17699397 (-) True G256598
TU304027 lncRNA upstream 400236 18285815 ~ 18286091 (-) False znf217
TU304084 lncRNA upstream 463264 18348843 ~ 18349692 (-) True G256929
TU304576 lncRNA upstream 767514 18653093 ~ 18653315 (-) True G257322
TU304681 lncRNA upstream 923484 18809063 ~ 18860788 (-) True LOC113530357
TU304682 lncRNA upstream 923484 18809063 ~ 18852217 (-) False LOC113530357
XM_034311782.1 mRNA downstream 226 17832401 ~ 17884017 (-) False src
XM_026920579.2 mRNA downstream 5741 17832401 ~ 17878502 (-) False src
XM_026920576.2 mRNA downstream 5741 17832401 ~ 17878502 (-) False src
XM_026920577.2 mRNA downstream 5741 17832401 ~ 17878502 (-) True src
XM_034311986.1 mRNA downstream 56284 17791380 ~ 17827959 (-) True mical1
XM_026921137.2 mRNA upstream 60108 17945687 ~ 17973544 (-) False nfatc2a
XM_034312047.1 mRNA upstream 60108 17945687 ~ 17972771 (-) False nfatc2a
XM_026921136.2 mRNA upstream 60108 17945687 ~ 17971822 (-) True nfatc2a
XM_026920428.2 mRNA upstream 99928 17985507 ~ 18032167 (-) True LOC113530442
XM_026920167.2 mRNA upstream 146877 18032456 ~ 18039804 (-) True sall4
XR_004579680.1 other downstream 188645 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1052984 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 1189213 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 2064089 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 2396384 15487757 ~ 15487859 (-) True LOC113530990
TU303855 other upstream 7502 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 399907 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 623576 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 1052331 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 1242885 19128464 ~ 19128536 (-) True trnak-uuu_17

Expression Profile