RNA id: TU303855


Basic Information

Item Value
RNA id TU303855
length 1067
RNA type TUCP
GC content 0.54
exon number 2
gene id kcng1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17884243 ~ 17913277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTAGCCTGTTGCTTATGTTCCTCAGATGTGCCGCTAGCACTCACTGAACAACACAGTCGAAGTGGAGTTGAAGCTCTGAGCAGCAGCTCGcacttctccttctcttctccttGTGACCTTTATCTTCTCTCATCTGACCTCCATCTTTTctcaaatatataaacatgatGAACACATCCGGCTGCAGACAAACCGGATCAACCCTGTGGTGAGGGCCAGTGAATAATTGCTGGCCTCCAGGCATGTGAGGCGCTCTGAGATTGGAGGTGTCCGGGTGAAAGATGACTTTACTGGCTGGCGATGGCTCTGACTATGACTACAGTGCCTTGAGCTGCATCTCGGACACCTCACTGAACCCACCACCCATCCAGGATAGCGAGGCCCTTAAGGGTGTTTACTACAAACGTGCTCGGTGTCTTGCTAAGGATCCTGATGCTGATGCCAGCCTCTTGCCTGGCACCCAACGCTTACATGCCATCATCAATGTGGGTGGCCTGCGCTACCAGTTGCCATGGAGCACGCTGGATGACTTCCCACTGTCACGGCTAGGCCGTCTGCGTCTGTGTACAAGCTTCGACGagatcatgtgtgtgtgcgacGACTACGATGTGGCTCGCAATGAGTTTTTCTTCGACCGAAGCCCATGTGCTTTCCGTGCCATCCTGACATTCCTGCGTGCGGGCAAGCTGCGTGCTTTGAGAGACACTTGTGCTCTGTCCTTCCAAGAAGAACTGCTGTACTGGGGTGTCCCAGAGGAAAAGCTGGAGTGGTGCTGCCGAAGGCGCCTGATTCAGCGCATAGAGGAGCGTGATGAGCTTGAAAGGGTGGCcgaggaagatgaggaagaggaagatgatgagAGTGATGGAGGTGGTAGGGAGGGAGGCCTGGATAGAGAATCTCGAGCGGGCCGCTGCATGGTCAAGCTAAGGGACATGGTGGAAAGGCCGCACTCAGGTCTTCCTGGAAAGATCTTCGCTTGCCTCTCAGTGCTCTTTGTCACCATCACAGCCATTAATCTGTCCATAAGCACCATGCCTGCCATGAGGGAGGAGGAAGAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303854 lncRNA downstream 7502 17884243 ~ 17885579 (-) False kcng1
TU303780 lncRNA downstream 102174 17790641 ~ 17790907 (-) True G256689
TU303706 lncRNA downstream 159032 17733806 ~ 17734049 (-) True G256623
TU303705 lncRNA downstream 160618 17732097 ~ 17732463 (-) True G256622
TU303696 lncRNA downstream 171148 17721723 ~ 17721933 (-) True G256613
TU304027 lncRNA upstream 372538 18285815 ~ 18286091 (-) False znf217
TU304084 lncRNA upstream 435566 18348843 ~ 18349692 (-) True G256929
TU304576 lncRNA upstream 739816 18653093 ~ 18653315 (-) True G257322
TU304681 lncRNA upstream 895786 18809063 ~ 18860788 (-) True LOC113530357
TU304682 lncRNA upstream 895786 18809063 ~ 18852217 (-) False LOC113530357
XM_034311782.1 mRNA downstream 9064 17832401 ~ 17884017 (-) False src
XM_026920579.2 mRNA downstream 14579 17832401 ~ 17878502 (-) False src
XM_026920576.2 mRNA downstream 14579 17832401 ~ 17878502 (-) False src
XM_026920577.2 mRNA downstream 14579 17832401 ~ 17878502 (-) True src
XM_034311986.1 mRNA downstream 65122 17791380 ~ 17827959 (-) True mical1
XM_026921137.2 mRNA upstream 32410 17945687 ~ 17973544 (-) False nfatc2a
XM_034312047.1 mRNA upstream 32410 17945687 ~ 17972771 (-) False nfatc2a
XM_026921136.2 mRNA upstream 32410 17945687 ~ 17971822 (-) True nfatc2a
XM_026920428.2 mRNA upstream 72230 17985507 ~ 18032167 (-) True LOC113530442
XM_026920167.2 mRNA upstream 119179 18032456 ~ 18039804 (-) True sall4
XR_004579680.1 other downstream 197483 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1061822 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 1198051 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 2072927 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 2405222 15487757 ~ 15487859 (-) True LOC113530990
XR_004579746.1 other upstream 372209 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 595878 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 1024633 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 1215187 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579690.1 other upstream 1457410 19370687 ~ 19387041 (-) False LOC113530570

Expression Profile