RNA id: XR_004579746.1


Basic Information

Item Value
RNA id XR_004579746.1
length 5185
RNA type misc_RNA
GC content 0.47
exon number 7
gene id znf217
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18285486 ~ 18300687 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGACTCGGGAGCGCGCTTCTGAATGCAACAGCTGCATAGTGAGCGAGATTTGCAAACATTGAAAGCGAGCTTTTTTGGCCAGCGAACAATTGGCTAACGCAGCTACTGACAATACAACTTATTTTCCGGATAAGTTATCTGTCTACAAGTCCGGGATAAGTGTCGTTATGTATATATTCGAATAACTTGATATAATAGCTTGAGAGTACCTGACGAGTGGACATATTGGTTCTGCCTGCCAGGACATAATTCCTTTGTGTGAATCACAAGATATCTGAAGAGATTTCACTTGTAAACACCTTCTGGTGACAAGCCCTAACTATTTTGCGTGGTTCATAATGAAACTCTCGGAGGATCCACTTTTTTGGAGGTTTGTGTGAAATCTGACTGTCAGTCTGTTCTTTGGAAAGGGAATTCCACATTCGTGTCTTCCAAGAATTGTATTACATGAGCGTGCCTCACAGAGCCTGCAGTCTCGATACGTATTTTCTGAAGGTGTTGAGTAAGGATTGTCATTGCCATGCCCACACACCCATTGATTCCACATGTGGAGAGTCCTGATGGGCTAGGCCATGATGTCCTCAACCACAGCAGTGCCACTATGCCTAGCTCTGGCTCCAGCTCTAGTATAAAAGCCCACGTGAGCCTGGCAGAGAAGGTTGAAATGCAGTTGGCAGTGCCAGTACCAGGCGGCTCACCCCTGGCCTGTatgttctgtgaggagacatttgaGCATGAGGATGAGCTCGGGCCGCACCTCCTCTCCCAGCACCCCACCACGTTCCACGCTCCTGCTGTGCTGCGTGTCGAGGCCGAGTTCTTAACGCCCAGCGAGAGGACTCGCTCCAAAACATGCCAAAACGAGCCGAACGAGGAGCTCAGCTGTGATGTGTGTGGCCAAGCAACTGAAAATATTGCTGTGCTCGAGGCTCACATGCGGAAGCATAAGGACTCATTCATTTACTCCTGTAGCCTGTGTGGCAGGCGCTTCAAGGAGCCCTGGTTCCTCAAGAATCACATGAGGACCCACGGCAAATCCAAATCCAGCAAGGGCCAGGACGCCGAGGTGCCCATCACTGTCAACGGCGTCGTCCAAGATCGACCAGTGTCACCTGTGATGACAGCTTACAAAATGTGCATGGTCTGCGGGTTTTTCTTCCTCAACAAGGAAGTGCTAGCGGAGCACAGCAAAGTGCACAATCGAGAGCCGGAAGCTGAGGAGAATGTGTGTGATAAAAGCCAGCTGAATCCGGAGGTGCCTGTCTCTCAGGAATGCTTTCTTCAGTGCGTCAATTTACAGAGAACATCTGAGAATGCTGAGCAAAAATGCCAACCCGGCCGCTGGATCTCGCAGCTGGACCCGTTCAACACCTACCAGGCCTGGCAGTTGGCCACCAAAGGCAAGATTGCCGCAGGGCCGAACCTGAGCAAAGAGCTCAATGCCGACTCCAATTCTGACAACGAGGAGTCTGGTTCAGACAAAGAGGAGCTCGGCTCTATCTGGGACTCTAGCGGTGGTGATAAACTGGTGAGACGGGGCCTGAGGAGTGAGCTGAAGGCCAAACTCAGTGGTGGTGATTTGACAGAGCAGAAGAGTCTGAGTCTGCGCAAAGACAAGCCCACAGACTGCGAGGAGTGCGGCAAAACATTCAGAACCTACCATCAGCTGGTCCTGCACTCCAGAGTtcacaaaagagagagaggaggagccGAGAGCCCCACCACACCCGTAGATGGGAGGACTCCGAGCGTCAGCTCCGCCGGGAGTCCGTCACTGGATCGAGCGGAAGATGGCTCTGAGGACGGCTATGAAGAAGGTGTGCCTGTTGAAGCTTTTCAGTCAgataaaattgaaGAAGGCTCAcacaaaatgaaactgaaaattcTTGCTCCAAGGAAGTGTTGTTACTGTGGCAAGACCTTCCGCTCCAACTATTACCTCAATATTCATCTCAGGACGCATACAGGTGAAAAACCTTACAAATGTGAATACTGTGACTATGCTGCAGCTCAGAAGACCTCTCTGAGGTATCACCTGGACCGACGTCACAAAGACAAGCCTTATACTGAGATCCCCAACATTCCAGTGACGGCACCTGCTGCTAACAGTGCCAAAGGTCAAGAGTCTCCTAACAACATGGATGACAAGCCAGCCTCAAAACCAGCTAAACAATGGCCTGCCCCTAGCGCTGTGTGTGCAAGCGTCAAACATGAAGCAGTCCCCAGCCAGGCAGGCATTGCCATCACCAGCCCTGTTGCCCGTGTCAAAGAGGAGTGTGCCAACATGGCCGCAACGACTCCTTACACTCCTCCTAACGAGCCGCACGTGAATGGCTCTTTGCCAGTCAACCCGAAGTCAGAGGGGAAAGAAGCCTCTGAGGCACCATTAAACCTCTCCCTCAAAGCGTCTCTGTCTTTATCTGCTACCTCCATACCTAGGAATATGTTACTGACCAACACCTGCACTTCCTGTCCTTATGAAACCCTCTATCCCGAAGTCCTGCTCATGCACAGGAAACTTCTTCATAAGGAGAAATCTGATGCAAAAAAGAATTCGTACAGACCCCCACTAAAGCTGAAGCGCTACACTGGGTGTCCCCCGGCGCTCGAAGGCAAAGACGTGGCCCCTTTGGCTCACATCAACCGAAAACATCCTCGCCGGACCAAATCCCCAACACCCCAACCTGGAAAATCTTCCAAACCTCCTCAGGACACGTACAGGACTCTTCCAGGGATTGGTACGAAGAAACCAGAGATTTCAAAGATGTCCCCTGCAAAGGAGACCTGGAGAGAGCAGCAGAAAGCAACCCAGAAGTTCAGGGCTGCCGAATCTGTTATAGGCGTCCAAACCAGGTTTCCAGAGTCAGTGGCTGAAACTAACCGGAAATTTAACTCTCCCGCGGTCTCTCAGAAGCCCGCTCCAGTTAAAAATGGTGTCGTCTGGCCCTCGGAAGCAAACAGGCTGTGTCTGTCCGATCGATTCAGGAACCTGGCACAAACGGACTTGGGTGAACCCTCCAGCAAAAGGTTGAGACCTTCTGAGCCTCTGCAGGGTGCAGGGAGAATCGCGGAGCTGCCCTCGGACAGGAACGTGAAAAACTTCCTGCCCTTGGCTTCTGTTCGTGTGTCACCCTCAGGATCAGGAAGTAGCCTGGACACTGACTGGAATGTAATCAACCTGCTACGCACATACACGCCCAATGAGCTGGCATCCCTGTACCAACCCGCTATTCCAGGCTCCAGCCATGCTGTGACTGGAAATTCGCCCGCTGCTGGTAAGCAAATACTgAAGCAGGGCTCTGCCCTTCTCACATTACCCGGGTAACATCATTCAGCGGAGAAGCCACCCCAACCCTCCTGACGCCACCTCTTAGAACATGgtttGACCTGTTTTGAAAAAAACCAACCATGGGAACTATGACTGGAAGAAAAGTTTACTCCTGACACTACTTCTAGAGACAGACATGTGACCAAGATGTGATATTAAGGCTGTGTGGGGGTTTCATTTGTTATCTCGACCTTGGTTAAGAGGCAGCGTGAACTCAGAACTGGGCCTTGAACAGTGTTGCATTTTACACGTCATAACGTTCCAGTATATCAACAGCGTACAGATGTGGTATTGCACTTAACGCAAAACACAACATATCATGCActcctgtttactgtaaaaatttGGACATGTTTCAAAATCAAATGCTTTTGGGGCAGAGCTTTGATTTGCCCACAATATTACATCAAATAAGTGCCTCTTCTACTTGATCTAAATGCTGTTACACAAAGGTAGGATAGACCAAATAAACTTGACCCACGTTTGGTTCAGATAGATAAActatattttgtaaatgttaagaCATTTCTATTTAGGCTGTGCTGAAAAAGGGTCGACTTTATGCCGTGCAGCTTCTGGCAGAGTTTTATATCGCAGTTAAAACCGTTTCAGTTTCCCCCCCATTTGTGCAAATgaaagctgctgttttttttgttttgttttgtttttcctcccgTCTCAAAACTGAGACACACAAAATAATGGTGACGTACTGTGTACTTTCTTTGTATGGGGACTTTGCTTGGAACCTCTCACTGTGATACGCATCCACGGCATCCTCAGGTCTGATGGACGGCAGAACTGGAACAGATGGATGATAGAACTCTCTGTCGAGGGCTTCCATTGGTTTGATgttacattttcacacactttgatttatatcctttttttttttgggtcaaggatatatatttatttttctagcGAATGTCCTGCTTTGTCTGTTTTGTAGTCATTTGTGTGTGGAAAAGATAGTGGATGCGAATATGGCATTCTCGGAGCCTGTGATAGTGGCTTATTTACTGACCAACTTGTGTTATGGTCTGCTTTTCTGAAACTACCTTACCCACCTACCCTACAGTTGCATTGTTTCATAGCACCAGaatgttaatttatttgctgatatttaggGGACTTTTGTGAGCTGCATCAGATAAActtgaaatatgtttttgttttggcagTTCAATGGAAAGgccacctctttttttttttttttttttttttttctttccctctccttCTTTGCCTTTTGTGCTTTTTCACCATATGTGTAATCTGTTAAACTGGGAGAAAAGCCTGCTGTCGACGTTTAACATGCTGGCCACTAACGTGGCTCAAATTGAGTAATATTTGTACGTGTAGCTTGAGTGTTTGTTTAACCTCTGTTGTCTCTCAGTATTGGATTCTGTCAgtgtttaatattgtttttgctTAGCTAAGATGGATACATCACTGATATGCGCCATATGTAAATACGTGTGTTTTTGATTATTCTGCCCtccattgttatttttattcttctgcACTTtcactactaatttttttttttttttttttttttttttttttgtatgcgATCAGTTGGAGCGGTTTTTGCCCTCTCCCAGTTCTGGGAACACCATGCACTGAGCAGAGCAGTGTAAATGCAATCGTCTCCCCAGAACTTCTACAGACTACAGCTATAcaggaaaacacaaacataattaCGAGCAAAGATTTCAGCTCTGTTGTTCAGTATGTATATTCCGGTCTTTCCCATTTTTCTATACCTTTGTAACCATGCTCATGAGACTTACGAGTGTATTTCTGACTGTTCAGTTGCAGAATAAAGCAATGGTGTGTGCTAGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303854 lncRNA downstream 399907 17884243 ~ 17885579 (-) False kcng1
TU303780 lncRNA downstream 494579 17790641 ~ 17790907 (-) True G256689
TU303706 lncRNA downstream 551437 17733806 ~ 17734049 (-) True G256623
TU303705 lncRNA downstream 553023 17732097 ~ 17732463 (-) True G256622
TU303696 lncRNA downstream 563553 17721723 ~ 17721933 (-) True G256613
TU304084 lncRNA upstream 48156 18348843 ~ 18349692 (-) True G256929
TU304576 lncRNA upstream 352406 18653093 ~ 18653315 (-) True G257322
TU304681 lncRNA upstream 508376 18809063 ~ 18860788 (-) True LOC113530357
TU304682 lncRNA upstream 508376 18809063 ~ 18852217 (-) False LOC113530357
TU304683 lncRNA upstream 508376 18809063 ~ 18863122 (-) False LOC113530357
XM_026921267.2 mRNA downstream 200194 18075318 ~ 18085292 (-) True zfp64
XM_026920167.2 mRNA downstream 245682 18032456 ~ 18039804 (-) True sall4
XM_026920428.2 mRNA downstream 253319 17985507 ~ 18032167 (-) True LOC113530442
XM_026921137.2 mRNA downstream 311942 17945687 ~ 17973544 (-) False nfatc2a
XM_034312047.1 mRNA downstream 312715 17945687 ~ 17972771 (-) False nfatc2a
XM_034312023.1 mRNA upstream 7567 18308254 ~ 18339653 (-) False bcas1
XM_034312035.1 mRNA upstream 7567 18308254 ~ 18339645 (-) True bcas1
XM_034312032.1 mRNA upstream 7567 18308254 ~ 18338828 (-) False bcas1
XM_034312033.1 mRNA upstream 7567 18308254 ~ 18338828 (-) False bcas1
XM_034312024.1 mRNA upstream 7567 18308254 ~ 18338828 (-) False bcas1
TU303855 other downstream 372209 17893081 ~ 17913277 (-) False kcng1
XR_004579680.1 other downstream 589888 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1454227 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 1590456 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 2465332 15715035 ~ 15820154 (-) False znf512b
TU304189 other upstream 208468 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 637223 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 827777 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579690.1 other upstream 1070000 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 1314840 19615527 ~ 19621560 (-) False magi3a

Expression Profile