RNA id: XM_026921196.2


Basic Information

Item Value
RNA id XM_026921196.2
length 2032
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC113530839
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18509148 ~ 18531252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGTTGGGGTGGAGTGAACTTGGACATCCacgatgacttttttttccctctttatatttaattaggCAGCTGCACAGCAAAGCAAAGCCATGCTGTAGTGTGCCTGATGGAAAAACCGATCCTAACATGACATCACATGAgcactgtgtgtaaatgtactCGAGTTAGTCGTGTGAGGGGGAAGTTGTGTGACTAACATGGGGGATATCAGTGAAGCTTCTCTGCTGGAATACATCTATTCCTCCGGCGGAAAAGTTACAAATTCAGACTTGATGAAGACCTATAAGCAGTTTGTAAGCCATAGTGATTTACACTTACGTGCCAAATACAGGGAGGACTTCAAGCTCATCATCGACAGAATagctgtgtgtaagtgtgagaaTGGAGAGAAGTACCTTATCCTGAAGAAGAAGTACAGGCAGCTCATGCAGGAGCGTGAATCTGAGCCTTCGGCTTCAGCGCaggagctgaagatgaaaaagaacaCAGTCGAATGGTGTGTAGGACCCACCATTACTGTTACTGATGCCCAAGATCCAGACGAGAGGCAGGATGTGACAGTTGACCAACCCTCAGTGGAGAACCCAGAACTTCTGTCAGAGGAGAACCCTGAACCCACAGACGCAGAGGATGAACTGGAAAAGGACTCAGGGTCAAAGtcAGAATcggagcaggaggaggaatCTACGGGTATTGTAAGCCCTGCAGCTGTTGCTCTGGATCCTATTGAGAAAGAGTGGATCTGTTCTGCAGCATGTGGCAGACTCTCACACCTCACCCAGCTGCTCAAACGGGACGCCTCACTGGCCAACAAAAAAACTGCTCTGCACTGGGCTGCTAAGCACGGAAAAGAGGACATGGCTGCTGCGATGGCTGACGCAGGGGCCGACGTCAACACCAAAGCTcatGGTGGatacacacctttacacattGCTGCACTACATGGCCATGTGCATATATTTAATCTACTCATCCAAACATATGGTGCTAAGGAAAATGTGCGAGACTACAGCGGTCACTTAGCATCCCATTACCTGAATATACAGAAAGCAGAGGAGAGCAGTGATCTGAATGCCGGATACTCCAGCCCAGCGCAGGTGACCGAGCGCCGCAACAAGAAGTTAACGTCTCTGTTTCACTCACGGAAGAAATGGGGTTCTGCAGAAGATCTGGCGCCCGTCCCGGAGGAGAGGAGCGTCTCGCATCAGCTCATCGTCCCTGCCTTCAGACCCAGGAAGTTCTCCCGCTGAACTCTCATCACTGCTATACGGCGCCACAACAAGGGTTGAAGTACAAGTAGTTCTCTTACAGTGTAAACATTTGTGGACCTGGTATTTGTTCTacacacaaatactgtatatttcttatttcGTAGCTATGCGATAATATTAAACtcttactgttttatttatgtttttgtgttagAGGCTTTATACCtctaaaaatatctttttttcttgttttcattcctgtatcttttttattttcctccacACAATATGAGGGTCAAGGTCATACGGGCTGATAAAAAAtaacctgttttatttttttattctgttaatgataaaaatatacagaagtTGTCATGCTGCTACATGCTTTCTAAGGCTTACAGAACCACATTTTGCCTGGTTGTTATTTTTTAGCTTTACATgactattttaaaatgtattttattttgcatatttctgtTAGTAAATgaaaatagtaatagtaataaatagtaaatgaAAAGTATTATACCAGTGACATCTTGTTTAAGGTGACACTAATTTGTGCCTTATGCTCTAAGTGTAaaatttttttgcttatttttttgtagtgcttaaaaatgttgtaatgcatatttttcaaattgacatgaacaaaaatattattttttttactcataagTTTTGTCTACATTGGCTCACATTTATGCTGATTGTTATGCtgtcattattaataattagcAAATTTCTCTCTAATGACTGGGTCAAACACATTCTTGCCAAGTTCTTTTCTAATAAAAACCTGATTTTGGGATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304084 lncRNA downstream 159456 18348843 ~ 18349692 (-) True G256929
TU304027 lncRNA downstream 223057 18285815 ~ 18286091 (-) False znf217
TU303854 lncRNA downstream 623569 17884243 ~ 17885579 (-) False kcng1
TU303780 lncRNA downstream 718241 17790641 ~ 17790907 (-) True G256689
TU303706 lncRNA downstream 775099 17733806 ~ 17734049 (-) True G256623
TU304576 lncRNA upstream 121841 18653093 ~ 18653315 (-) True G257322
TU304681 lncRNA upstream 277811 18809063 ~ 18860788 (-) True LOC113530357
TU304682 lncRNA upstream 277811 18809063 ~ 18852217 (-) False LOC113530357
TU304683 lncRNA upstream 277811 18809063 ~ 18863122 (-) False LOC113530357
XR_003403141.2 lncRNA upstream 312823 18844075 ~ 18852165 (-) False LOC113530357
XM_026920075.2 mRNA downstream 7337 18500181 ~ 18501811 (-) True irx7
XM_026920120.2 mRNA downstream 31349 18440875 ~ 18477799 (-) True LOC113530281
XM_026920121.2 mRNA downstream 74162 18425365 ~ 18434986 (-) True cbln4
XM_034312030.1 mRNA downstream 170320 18308254 ~ 18338828 (-) False bcas1
XM_034311881.1 mRNA upstream 9011 18540263 ~ 18565527 (-) True plekhg5b
XM_034311882.1 mRNA upstream 34272 18565524 ~ 18607418 (-) True LOC117595686
XM_026920149.2 mRNA upstream 125843 18657095 ~ 18675212 (-) True avpr2aa
XM_026920788.2 mRNA upstream 162155 18693407 ~ 18703924 (-) True idh3g
XM_034311652.1 mRNA upstream 405325 18936577 ~ 19064473 (-) False lrp1ab
XR_004579746.1 other downstream 208461 18285486 ~ 18300687 (-) False znf217
TU303855 other downstream 595871 17893081 ~ 17913277 (-) False kcng1
XR_004579680.1 other downstream 813550 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1677889 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 1814118 16647823 ~ 16695030 (-) False fam50a
XR_004579689.1 other upstream 406658 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 597212 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579690.1 other upstream 839435 19370687 ~ 19387041 (-) False LOC113530570
TU305224 other upstream 1084275 19615527 ~ 19621560 (-) False magi3a
XR_003403201.2 other upstream 1569747 20100999 ~ 20109210 (-) True kansl2

Expression Profile