RNA id: XM_034311650.1


Basic Information

Item Value
RNA id XM_034311650.1
length 4139
RNA type mRNA
GC content 0.52
exon number 28
gene id fmnl3
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18879481 ~ 18934319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGAGCTGCAAACAGACCGCCTCAGTAGGCAGGACTCAGGACTGAGAAAAAAGGGTGGGTCGATGGATAGCCCCGTGCAAACCGCGCTCTGTATCAGGACTGCGCAGGCAAATGAATGGAGGCTGGAGGCAGCTAGAAAACTCTTCAGACTTTAAGAACAGGAGGGAAATACTTCAGAGAAGACCACGGCTCTGGGTTTGAGATGGATTGGCCAGGTAGCTTTGAGACAACTCTGTGGAAAATTGATACATGATCGCTTTTTGGAGTCTGAGGTTACTTTTTTTAACAAGCAACAGATGCTTTAAAGAAAGTCCATTCACAGATCAGGAGTGAGATTCCACAGATCTGGAGTGAGATCCTACAGATCAGGAGTGAGATCCTACAGATCCAGAGTGAGATCCCACAGATCAGGAGTGAGATCCTACAGATCAGGAGTGAGATCCTACAGATCAGGAGTGAGATCCTACAGATCCAGAGTGAGATCCCACAGATCAGGAGTGAGATCCTACAGATCCAGAGTGAGATCCCACAGATCAGGAGTGAGATCCTACAGATCCAGAGTGAGATCCCACAGATCAGGAGTGAGATCCCACAGATCCGGAGTGAGATCCCACAGATCAGGAGTGAGATCCCACAGATCAGGAGTGAGATCCCACAGATTCGGAGTGGAGTTTTGTTTAGGAATCACATCACCAACTCGGGGATGTGATCGACTGGATTTATTGGGAATTCAGAAAGAATCTTAGACTTCTCAAATCTCAAAGTGCGTCATCTGAAGCTGTGGATGTTGTAGCAGAGCTTTATTTCAGCCATGGGGAATTTGGAAAGTGTGGATGGACAGTGTGAGATGAAGCATCACATCATGCCATTAAAGGTGCCAATGCCGGAGCCTGCTGAGCTCGAGGAACGCTTCGCTCTCGTTCTGAGCTCCATGAACCTGCCTCCAGACAAAGCACGCCTCCTTCGCCAGTACGACAACGAGAAGAAGTGGGATCTCATCTGTGACCagGAGCGCTTCCAGGTGAAGAATCCCCCACACACGTACATTCAGAAACTGAGGGGCTTTTTAGATCCAGGAGTCACACGCAAGAAATTCCGCAGGCGGGTTCAGGAATCCACCAAAGTTCTGAGGGAACTGGAGATATCGCTGAGGACCAATCACATCGGgtGGGTGCGGGAGTTCCTGAATGATGAGAACAGAGGACTGGACATCCTGGTGGAGTACCTCTCCTTTGCGCAGTGCGCTGTCACGTTGGATTTTGATGGTCTGGAGAATGGGGAGGACGGCTCACTGGACAAAGCCAAGTCCTGGAGCAGGTCCATTGAGGATCTGCACCAGAACGGTTTCAGTACACTGGTGCGCTCAGTGCGTCACTCGGTCCCTCGGTATAATTCAGCAGCAAACAGCAAAACCATCAAAAACTCCAGGATAGTGAGTCAGAAGGATGACGTGCACGTGTGCATCATGTGTCTCCGAGCAATCATGAACTATCAGTACGGTTTCAACATGGTCATGTCCCATGCGCATGCGGTTAATGAAATCGCCCTGAGCCTGAACAATAAGAACTCACGGACAAAAGCACTGGTCCTGGAGCTTCTGGCTGCTGTGTGTCTGGTGCGAGGGGGCCATGAGATCATCCTCTCAGCGTTTGATAACTTCAAAGAGGTGTGCAAGGAAAAGCACCGCTTTGAAAAGCTGATGGAGTACTTCCGCTGTGAAGATGGAAACATTGATTTCATGGTGGTCTGCATGCAGTTCATCAACATTGTGGTCCATTCTGTAGAGGACATGAACTTCCGTGTGCATCTGCAGTATGAATTCACTAAACTGGGTCTGGATGATTTCCTAGAGAAATCCAAGCACACAGAGAGCGATAAGCTGTCAGTGCAGATCCAGGCCTACTTGGACAACGTGTTCGATGTGGGAGGACTGCTGGAGGACGCAGAGACGAAGAACGTGGCTCTGGAGAAAGTGGAGGAACTGGAGGACCAGCTGTCTCATGTGACCGAGAAGCTTCTGGAAGTGGAGAATGAAACGGTGATGAAAGTCGCTGAGCTGGAGAAGCAACTCCTACAGAAAGACAAGGACCTTTCAGCCATTCGGGAGACGTATGAATCGACGAGCTCTCAGGTGCGCACGCTTCGACGTGTGATACAAGAGAAGGATGCCGCCTTCCAGAGGCACACTAACATTGAAAAGCGGCTCCTGGAGCTCGAGCAGCAGGGAACTATCCGCCTGAGGAAACAGCCTGACGGAGACATTGCAATCGAGGCAAtgggtggtggaggaggaggaggaggaggaggaggaggaggggctATAGACATTATGATTGGAGCTCCTCTCGGGGAGCTGAGCTCAGGTAGCACCATCCAGGGTGTCAGTTCGCccgctgctactgctactactactgctactgtgGAAACGCCTgcaccacctcctccaccacctccacctccacccccAGCAGCAGAGTGTCtaccacctccacctccacctttGGCTCCTCCACTTCCTGGAGCGTCACCCTCAGTCATCCTCAGTGTTGGTTTAGCAGCCATCCGCATCAAGAAGCCCATAAAGACCAAGTTCCGTCTTCCTGTATTTAACTGGACTGCTCTGAAGCCCAACCAGATCAATGGCACTGTCTTCAACGAGATCGATGATGAGCGAGTGCTTGAGGAGCTTGACCTGGAAAAGTTTGAAGATCTCTTCAAGACTAAAGCACAGGGTCCTGTGGTTGATCTGTCCTGTACAAAGAGCAAAACCTCAAGTAAGGCCATGAACAAAGTTCAGCTTCTTGATGCTAATCGCTCCAAGAACCTGGCCATCACACTACGCAAGGCCAACAAGAGCACAGAGGAGATCTGCAGAGCCATCCAAACGTTTGATCTCAAGGCCCTGCCGGTGGACTTTGTGGAGTGTCTGATGCGTTTCCTACCCACGGAGGCAGAGAGTAAGCTGCTGCGTCAGTACGAGAGGGAACGGCGGCCTCTGGAGCAGCTGGCTGAGGAAGACCGCTTCATGCTCCTCTTCAGTAAGATCGAGCGCCTCACACAGAGGATGAACATCATCACTTTCGTGGGGAACTTCAGCGACAACATTGGCATGCTGACTCCGCAACTCAACGCCATCATTGCTGCTTCAGCCTCTGTGAAGTCTTCTCCAAAGCTGAAAAGAATGCTTGAGATTATTTTGGCCTTGGGTAACTACATGAACAGTAGTAAAAGAGGCTCGGTCTATGGTTTCAAGCTCCAAAGTTTGGATCTGCTGCTGGACACGAAGTCTACTGACCGCAAGATGACGTTACTTCACTACATCGCTCTGATAGTGAAGGAGAAATACCCAGAGCTCGCTAACTTCTACAATGAGTTGCACTTTGTGGACAAAGCCGCAGCAGtgtctCTGGAGAATGTGCTGCTGGATGTGAAGGAGCTGGGAAAAGGAATGGAGCTGATCAGAAGAGAGTGCAGTCTGCATGATCACCCCGTCCTCAAGACCTTTCTGCAGACCAACGACCCGCAACTGGACAAGCTGCAGAAAGACGCCAAGACCGccgagGAGGCTTTCAACACTGTGGTGATGTACTTTGGCGAGAGTCCCAAGACAACTCCTCCGTCTGTGTTCTTCCCTGTGTTTGTGCGCTTCATCAAAGCCTACAAAgatgCAGTTGAGGAAAACGAACAGAGGAAGAAACAGGAGGAAGCTATGAGGGAGAAACTGCTTGCTCAGGAGGCCAAACAGCATGATCCCAAGGTGCAAGCTCAGAAGAAGAGGCAGCAGCAGCACGAGCTCATCGCTGAGCTGAGACGGCGACAAGCCAAAGACCACCGTCCAGTCTACGAGGGCAAAGACGGCACCATCGAGGACATCATCACAGCGCTGAAGAGTGTGCCGTTTACAGCGCGCACGGCCAAGCGGGGCTCGCGCTTCTTCTGCGACACCAACCTGTACGACGAGTCCAACTGCTAGCCCCTTCCTAAGCTCCCTCTCAAAATCTGTCCCTAATTCAGAAgATCTCCGAAGCCAGCCGTTCCTGCGAGCTGACGCGGTGATCCGAAATGGGTGGAAGCGACCCTAAAGACCCTCCCTGACCCCTCTCCACCCTGCGCTTATCTCCCTGCACCTCACAGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304316 lncRNA upstream 33134 18841788 ~ 18846347 (+) False LOC113530356
TU304314 lncRNA upstream 33311 18841788 ~ 18846170 (+) True LOC113530356
XR_003403140.2 lncRNA upstream 36244 18841753 ~ 18843237 (+) False LOC113530356
TU304261 lncRNA upstream 258176 18620249 ~ 18621305 (+) True G257068
TU304260 lncRNA upstream 258306 18620249 ~ 18621175 (+) False G257068
TU304435 lncRNA downstream 132999 19065854 ~ 19066133 (+) True G257196
TU304438 lncRNA downstream 185022 19117877 ~ 19118533 (+) True G257199
TU304467 lncRNA downstream 265691 19198546 ~ 19222505 (+) False pkig
TU304470 lncRNA downstream 270481 19203336 ~ 19222505 (+) True pkig
TU304478 lncRNA downstream 300148 19233003 ~ 19235261 (+) True G257235
XM_026920254.2 mRNA upstream 2135 18850483 ~ 18877346 (+) True esyt1a
XM_026920251.2 mRNA upstream 42541 18829063 ~ 18836940 (+) True pa2g4b
XM_034311883.1 mRNA upstream 53376 18786766 ~ 18826105 (+) True erbb3b
XM_026920711.2 mRNA upstream 99824 18725277 ~ 18779657 (+) False si:dkey-151g10.3
XM_034311666.1 mRNA downstream 37139 18969994 ~ 18971248 (+) True LOC117599226
XM_034311662.1 mRNA downstream 158155 19091010 ~ 19117563 (+) True rbms2b
XM_034311663.1 mRNA downstream 158159 19091014 ~ 19117563 (+) False rbms2b
XM_034311661.1 mRNA downstream 158162 19091017 ~ 19117563 (+) False rbms2b
XM_026920224.2 mRNA downstream 228358 19161213 ~ 19165261 (+) True r3hdml
XR_004579712.1 other upstream 1758540 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2371101 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2483269 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 2484481 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 2650075 16210650 ~ 16229406 (+) False LOC113530889
trnae-cuc_34 other downstream 100062 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 545447 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1457954 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1577389 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1970250 20903105 ~ 20907250 (+) False ubxn10

Expression Profile