RNA id: XM_034311673.1


Basic Information

Item Value
RNA id XM_034311673.1
length 1306
RNA type mRNA
GC content 0.46
exon number 4
gene id pkig
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19198426 ~ 19222559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACAGAAACAACGCCAAACCCGCTTCTCATTGGAGGGAAGGAGCTGAGGCGAGGTCCCATTGGCTGAAGGCTAAAACTCCATTTTGCAAACAGCTGTTTGAGATGTAACCTCGCCCACTGGCTTCAATGGGGTTGTCAAAGAAACGTCGGGTTTGACGACGCTGCTGGCTCTTCGTGACGGACCCTTCGTCGAAAACGccaaataaatttcaaaatgaCGGAAAGGAAAGCCGAAATATAGCGAAGAGAAGacaagagaagagaacagaCGGTCCAGCTGCGTGGTAACAAGTGGAGGAAATTCAGGCGAATGAAGgagtgtatatttGGTAAAGAGGACATCAATGCTACTGAAGTACCAATCATCAGCAGCCATCTGCTCATGTGGAATGAGAAGACAGGTCATGGGCAGATGATGGACGTTGAGTCATCTTACTCGGATTTCATTAATTGTGATCGCACAGGCCGCAGGAACGCAGTGCCGGACATTAAGGGAGACGGAACAGTGGTGGGCACCAGTGAACTGACCAAAGACATGGCTCAGATGGACCTGAAGGCAGgagggtcgcggtggattcagagcctatcctgggacaTCTGGGCACAGGGCAGGAATAGACCCTGGGATGGGGAAGCCAGTCCATCATAGGGCACCTtatactcacacattcacacctaggagcagtTTTGGCATAGAGAGTgcacctaccggcatgtttttgggaggtgagaggaaaccagaggacacGGGATGAACATGACAGACGACACCGACAGAAACGCGAGCTCGGGATCACACTGGAGACCTTGGAAGTGTCAGACTGCAACACCAACCGCTGTGGCAACCTGCTGCCCTGAAATAACTATAAATCAAATTATgtgaaattgaaaataaaataaagcaaaaaatccAAGAACAACAGATAGGCCACAGTAAACTTGTTGTCAATCTGGAATTTAAAATCGCTTAGAGCTGGTGTTTGTAATGTTCCATGGAGCAGTATATAGGAGATTGGGGGCAATCTAAGGGATGCAATTTTACCACCTAAGCTGTGAGTGATGCCTGAGATTATCAGTGAGTAACACTGCCTCCGCTTATTGAAGTGCTCTGGATGGGCTAGACTTCTGCAGTAGATCaaatttgtatagcacttttaacaacagacaaaGGCTCATGTCAAATTTGTGTAGAAATGAGGTAGTTCTTACCTATACAACAATAtagaattattttaatgatataaGCTATTCAGATCGCcttattattgtatattgtcACACCCCTATTGGTTATTTCCACATGTG

Function

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304438 lncRNA upstream 79893 19117877 ~ 19118533 (+) True G257199
TU304435 lncRNA upstream 132293 19065854 ~ 19066133 (+) True G257196
TU304354 lncRNA upstream 261584 18909837 ~ 18936842 (+) False G257127
TU304359 lncRNA upstream 262007 18891889 ~ 18936419 (+) True G257127
TU304478 lncRNA downstream 11116 19233003 ~ 19235261 (+) True G257235
TU304475 lncRNA downstream 19225 19241112 ~ 19241568 (+) True G257232
TU304477 lncRNA downstream 21298 19243185 ~ 19245707 (+) True G257234
TU304485 lncRNA downstream 29558 19251445 ~ 19251797 (+) True G257242
TU304474 lncRNA downstream 38352 19260239 ~ 19311826 (+) True G257231
XM_026920210.2 mRNA upstream 3568 19190772 ~ 19194858 (+) False ttpal
XM_026920212.2 mRNA upstream 3568 19190885 ~ 19194858 (+) False ttpal
XM_026920211.2 mRNA upstream 3568 19191232 ~ 19194858 (+) True ttpal
XM_026920201.2 mRNA upstream 10467 19167301 ~ 19187959 (+) False hnf4a
XM_026920199.2 mRNA upstream 10467 19181966 ~ 19187959 (+) False hnf4a
XM_026920209.2 mRNA downstream 41530 19263417 ~ 19271222 (+) True ccn5
XM_034311665.1 mRNA downstream 51400 19273287 ~ 19275753 (+) True si:dkey-78k11.9
XM_026920219.2 mRNA downstream 51400 19273287 ~ 19275753 (+) False si:dkey-78k11.9
XM_034311658.1 mRNA downstream 61610 19283497 ~ 19294201 (+) True pfkfb1
XM_026920194.2 mRNA downstream 61610 19283497 ~ 19294201 (+) False pfkfb1
trnae-cuc_34 other upstream 165438 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 286712 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2077485 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2690046 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2802214 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 256415 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1168922 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1288357 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1681218 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1681260 20903147 ~ 20905073 (+) False ubxn10

Expression Profile